miRNA display CGI


Results 61 - 80 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 30495 0.76 0.269886
Target:  5'- cCCGAGCgUGgGGCGGcuGGCGCUGGGg -3'
miRNA:   3'- cGGCUCG-AUgUCGUCuuCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 30633 0.7 0.575111
Target:  5'- aCCGGGCgcggcccugGCGGCGucAG-CGCCGGGa -3'
miRNA:   3'- cGGCUCGa--------UGUCGUcuUCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 31091 0.67 0.746133
Target:  5'- cGCCGAGg-GCuGGCAGGacgccgcgcAGGCGCUGGa -3'
miRNA:   3'- -CGGCUCgaUG-UCGUCU---------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 31870 0.72 0.46159
Target:  5'- -gCGAGCUGCccGCcGAcgugcugguGGACGCCGGGa -3'
miRNA:   3'- cgGCUCGAUGu-CGuCU---------UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 32157 0.66 0.823609
Target:  5'- aCCGGGCggcaccaggUACGGCacccacuccucGGAgguGGACACCGGc -3'
miRNA:   3'- cGGCUCG---------AUGUCG-----------UCU---UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 32190 0.7 0.585839
Target:  5'- cGCCGucGUUcCAGCAGAucGGCAcguCCGGGa -3'
miRNA:   3'- -CGGCu-CGAuGUCGUCUu-CUGU---GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 32270 0.72 0.481433
Target:  5'- aGCCGAGCUgGCuGUugaaguaaccGGAGGugACCGGc -3'
miRNA:   3'- -CGGCUCGA-UGuCG----------UCUUCugUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 34165 0.66 0.80521
Target:  5'- uGgUGAGCguaAGCAGuuGGGcCGCCGGGc -3'
miRNA:   3'- -CgGCUCGaugUCGUCu-UCU-GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 35173 0.68 0.693728
Target:  5'- gGCCGAGCcggaaccgggugUGCAGUGGAacuGGGUGCCGGu -3'
miRNA:   3'- -CGGCUCG------------AUGUCGUCU---UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 35416 0.72 0.432659
Target:  5'- cGCCGAGgaGC-GCGGGAGGCgauggucccGCCGGa -3'
miRNA:   3'- -CGGCUCgaUGuCGUCUUCUG---------UGGCCc -5'
19183 3' -54.8 NC_004684.1 + 36102 0.69 0.629045
Target:  5'- aCCGAGgUACGGCGGuAGcCGCCGa- -3'
miRNA:   3'- cGGCUCgAUGUCGUCuUCuGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 41096 0.72 0.46159
Target:  5'- gGCCGAGCUGCguaccgauGGCcGAGGuCACCGa- -3'
miRNA:   3'- -CGGCUCGAUG--------UCGuCUUCuGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 41321 0.67 0.766389
Target:  5'- -aUGGGCUACGGCAccgcgaccGccGACGgCCGGGc -3'
miRNA:   3'- cgGCUCGAUGUCGU--------CuuCUGU-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 42007 0.67 0.735832
Target:  5'- cGCUGuGC-GCGGCGGcguAGGCgcugACCGGGu -3'
miRNA:   3'- -CGGCuCGaUGUCGUCu--UCUG----UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 42391 0.73 0.395785
Target:  5'- cGCUGAGCgcgaccgggUugGGCAGGaugccgcccugGGACACCGGa -3'
miRNA:   3'- -CGGCUCG---------AugUCGUCU-----------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 42948 0.69 0.650699
Target:  5'- cGCUuguGGCUGCuGUGGuuGugGCCGGGg -3'
miRNA:   3'- -CGGc--UCGAUGuCGUCuuCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 43173 0.66 0.822707
Target:  5'- cGCCGAggucGCU-CGGCGcGAugucgggcaccgcAGGCACCGGc -3'
miRNA:   3'- -CGGCU----CGAuGUCGU-CU-------------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 43290 0.77 0.237762
Target:  5'- uGCCGGGCUGCGGCAccuuGAAGu--UCGGGa -3'
miRNA:   3'- -CGGCUCGAUGUCGU----CUUCuguGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 43863 0.71 0.532724
Target:  5'- cGCCGAGgUugGugaGCAGGcugguGACGCCGGa -3'
miRNA:   3'- -CGGCUCgAugU---CGUCUu----CUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 43940 0.68 0.672287
Target:  5'- uGUCGGGCauggaggcCAGCAGAucGGccaccgugcgcaGCACCGGGa -3'
miRNA:   3'- -CGGCUCGau------GUCGUCU--UC------------UGUGGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.