miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 45460 0.7 0.564427
Target:  5'- cGCCGAGgUugaugcuccCGGCGGuGGuCACCGGGc -3'
miRNA:   3'- -CGGCUCgAu--------GUCGUCuUCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 45593 0.68 0.692661
Target:  5'- cGCCGAccgucuuGCUGguGUAGGucGGGuCAUCGGGa -3'
miRNA:   3'- -CGGCU-------CGAUguCGUCU--UCU-GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 47081 0.68 0.683031
Target:  5'- uGCCaGGGCaccagaACGGCGGugccGGGACGCgGGGg -3'
miRNA:   3'- -CGG-CUCGa-----UGUCGUC----UUCUGUGgCCC- -5'
19183 3' -54.8 NC_004684.1 + 47782 0.66 0.823609
Target:  5'- cGCCGAGCgucaccgcCAGCAccucGGcCGCCGGa -3'
miRNA:   3'- -CGGCUCGau------GUCGUcu--UCuGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 48945 0.73 0.386888
Target:  5'- cGCCGAacgGCacguCGGCGGGcggGGugGCCGGGg -3'
miRNA:   3'- -CGGCU---CGau--GUCGUCU---UCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 51124 0.67 0.756322
Target:  5'- cGUCGGGCc-CGGCGcGA--ACACCGGGc -3'
miRNA:   3'- -CGGCUCGauGUCGU-CUucUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 53157 0.68 0.683031
Target:  5'- aCCGGGUc-CGGCGuGAAGGCcuCCGGGg -3'
miRNA:   3'- cGGCUCGauGUCGU-CUUCUGu-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 53359 0.67 0.735832
Target:  5'- gGCCGGG-UACAGCAGGAcguuGACcgaGuuGGGc -3'
miRNA:   3'- -CGGCUCgAUGUCGUCUU----CUG---UggCCC- -5'
19183 3' -54.8 NC_004684.1 + 53736 0.69 0.639875
Target:  5'- uGCCGGGUUcgACGGcCAGGA-ACACCGaGGu -3'
miRNA:   3'- -CGGCUCGA--UGUC-GUCUUcUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 54221 0.68 0.704367
Target:  5'- gGCCGAGgUcggcCAGCAGcuGuuccagggcaccGCGCCGGGa -3'
miRNA:   3'- -CGGCUCgAu---GUCGUCuuC------------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 54435 0.75 0.305416
Target:  5'- cGCCGcGU--CGGCGGGAG-CACCGGGg -3'
miRNA:   3'- -CGGCuCGauGUCGUCUUCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 56192 0.67 0.72543
Target:  5'- aUCGAGCgccCGGUGGAugAGACGCUGuGGg -3'
miRNA:   3'- cGGCUCGau-GUCGUCU--UCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 57558 0.66 0.786109
Target:  5'- cGCCGAGCUGCGcCGGuuggccGACAUCGc- -3'
miRNA:   3'- -CGGCUCGAUGUcGUCuu----CUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 57878 0.71 0.501682
Target:  5'- gGUCGgaAGCUggcGCAGCucguacGGGAGugACCGGGu -3'
miRNA:   3'- -CGGC--UCGA---UGUCG------UCUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 57901 0.66 0.786109
Target:  5'- gGCCGGGCUGa-----AGGugGCCGGGc -3'
miRNA:   3'- -CGGCUCGAUgucgucUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 58654 0.75 0.305416
Target:  5'- cGCCGGGC-GCGGCGGcgaACAUCGGGa -3'
miRNA:   3'- -CGGCUCGaUGUCGUCuucUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 58765 0.71 0.501682
Target:  5'- uGCCGAGgauCGGCGGugccGGuGCACCGGGc -3'
miRNA:   3'- -CGGCUCgauGUCGUCu---UC-UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 58971 0.67 0.760364
Target:  5'- cGCCGAGCUGCcGCGcuGGuuaccguucggcauCGCCGGa -3'
miRNA:   3'- -CGGCUCGAUGuCGUcuUCu-------------GUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 59440 0.67 0.735832
Target:  5'- gGUgGAGCUGCccauggccuuGCGGAAGGCcuuGCCuGGGu -3'
miRNA:   3'- -CGgCUCGAUGu---------CGUCUUCUG---UGG-CCC- -5'
19183 3' -54.8 NC_004684.1 + 59693 0.66 0.823609
Target:  5'- cGCCGAGCUGC-GCGGGGug---CGGGu -3'
miRNA:   3'- -CGGCUCGAUGuCGUCUUcugugGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.