miRNA display CGI


Results 101 - 113 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 61293 0.66 0.814502
Target:  5'- cGCCGGGUcgauuuccgGCAGCAcc-GcCGCCGGGc -3'
miRNA:   3'- -CGGCUCGa--------UGUCGUcuuCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 62718 0.66 0.795743
Target:  5'- gGuuGAGCUGCAaggcacGCAGGAcgguGuACACCGaGGc -3'
miRNA:   3'- -CggCUCGAUGU------CGUCUU----C-UGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 62806 0.72 0.451831
Target:  5'- uGCCGGGCagGCGGgGGAgcuuucAGGCcgACCGGGu -3'
miRNA:   3'- -CGGCUCGa-UGUCgUCU------UCUG--UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 62898 0.66 0.80521
Target:  5'- uGCCGuuGCcACGGCGGGccAGGCccugGCCGGu -3'
miRNA:   3'- -CGGCu-CGaUGUCGUCU--UCUG----UGGCCc -5'
19183 3' -54.8 NC_004684.1 + 63726 0.69 0.618217
Target:  5'- uGCCGGGCcACcGUAcGAugacccGGCACCGGGc -3'
miRNA:   3'- -CGGCUCGaUGuCGU-CUu-----CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 63931 0.71 0.532724
Target:  5'- gGCUGAGCUugGGCgAGAcGGcgaACACCGuGGu -3'
miRNA:   3'- -CGGCUCGAugUCG-UCU-UC---UGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 64534 0.71 0.532724
Target:  5'- cGCCcAGCggcuCGGCGGccuuGGugACCGGGu -3'
miRNA:   3'- -CGGcUCGau--GUCGUCu---UCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 64756 0.67 0.756322
Target:  5'- gGCCGAGCUGguGCc--AGGCGUCGGu -3'
miRNA:   3'- -CGGCUCGAUguCGucuUCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 64939 0.67 0.72543
Target:  5'- cGCCGAGCUGgccgcccaGGCGGgcGAugucggccuuguCGCCGGu -3'
miRNA:   3'- -CGGCUCGAUg-------UCGUCuuCU------------GUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 65805 0.72 0.451831
Target:  5'- uGCCGuGCaccggGCAGguGAcccggAGGCACCGGcGg -3'
miRNA:   3'- -CGGCuCGa----UGUCguCU-----UCUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 65884 0.66 0.773356
Target:  5'- cGuuGAGCgcgGCGcGCAGGuuGGccaccagggccgccGCACCGGGc -3'
miRNA:   3'- -CggCUCGa--UGU-CGUCU--UC--------------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 66161 0.67 0.746133
Target:  5'- aCCGGGUUGCuGGCAGAuccaGCCGGu -3'
miRNA:   3'- cGGCUCGAUG-UCGUCUucugUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 67259 0.66 0.775335
Target:  5'- uCCGGGCUggcgucgcugaacACGGguGcAGGuguuGCGCCGGGc -3'
miRNA:   3'- cGGCUCGA-------------UGUCguC-UUC----UGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.