miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 26988 0.69 0.633377
Target:  5'- gGCCGGuGCgagcGCGGCGGgcGcggcgaucaacagccAGGCACCGGGu -3'
miRNA:   3'- -CGGCU-CGa---UGUCGUC--U---------------UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 26929 0.66 0.776321
Target:  5'- cGCCGAGacccccgaGCAGCGGccgccuGGGCACCGc- -3'
miRNA:   3'- -CGGCUCga------UGUCGUCu-----UCUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 26853 0.66 0.776321
Target:  5'- gGUCGAGCaccaGCgAGCAGGAGGCGgCGcaGGa -3'
miRNA:   3'- -CGGCUCGa---UG-UCGUCUUCUGUgGC--CC- -5'
19183 3' -54.8 NC_004684.1 + 25936 0.67 0.756322
Target:  5'- cGCCGGGgU-CAGCccacuGACACCGGcGg -3'
miRNA:   3'- -CGGCUCgAuGUCGucuu-CUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 25816 0.73 0.395785
Target:  5'- gGCCGGGUgGCGGcCAGAAcGGCAUCGGcGg -3'
miRNA:   3'- -CGGCUCGaUGUC-GUCUU-CUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 24839 0.67 0.72543
Target:  5'- --aGGGCgGCAGCGGuAGcgcCACCGGGc -3'
miRNA:   3'- cggCUCGaUGUCGUCuUCu--GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 24772 0.73 0.386888
Target:  5'- aCCG-GCgGCGGCGGggGAggUGCCGGGu -3'
miRNA:   3'- cGGCuCGaUGUCGUCuuCU--GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 24581 0.69 0.630128
Target:  5'- uGCCGGGCgagcacguccugacgACAGCGGAcguGGCGCgcaUGGGc -3'
miRNA:   3'- -CGGCUCGa--------------UGUCGUCUu--CUGUG---GCCC- -5'
19183 3' -54.8 NC_004684.1 + 22868 0.71 0.501682
Target:  5'- uCCGGGCcaccACGGCGGccAAGACGCUGGa -3'
miRNA:   3'- cGGCUCGa---UGUCGUC--UUCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 22733 0.69 0.650699
Target:  5'- cGCCGccGCaGCAGCGGguGACGCaguGGGc -3'
miRNA:   3'- -CGGCu-CGaUGUCGUCuuCUGUGg--CCC- -5'
19183 3' -54.8 NC_004684.1 + 21553 0.67 0.766389
Target:  5'- -aCGAGC-GCGGCAugaccgccGAGGccguCACCGGGu -3'
miRNA:   3'- cgGCUCGaUGUCGU--------CUUCu---GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 20546 0.66 0.795743
Target:  5'- gGCCaGGCauucgucCAGCuauAGGAGGCACCGuGGa -3'
miRNA:   3'- -CGGcUCGau-----GUCG---UCUUCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 20230 0.76 0.276716
Target:  5'- gGCCGccGCUACGGUgcuccuGGGCACCGGGg -3'
miRNA:   3'- -CGGCu-CGAUGUCGucu---UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 19605 0.69 0.650699
Target:  5'- gGCCGAGgUGCuGGCGGu-GACGCuCGGc -3'
miRNA:   3'- -CGGCUCgAUG-UCGUCuuCUGUG-GCCc -5'
19183 3' -54.8 NC_004684.1 + 19536 0.67 0.746133
Target:  5'- cGCC-AGCUGCGGguG----CGCCGGGc -3'
miRNA:   3'- -CGGcUCGAUGUCguCuucuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 19335 0.66 0.795743
Target:  5'- cGCCGuGGCcg-AGCGGGAGGCGCUGa- -3'
miRNA:   3'- -CGGC-UCGaugUCGUCUUCUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 18846 0.69 0.636626
Target:  5'- gGCCGAGgUGuggcaggagguCGGCAacuacaucauccgcGAGGGCAUCGGGu -3'
miRNA:   3'- -CGGCUCgAU-----------GUCGU--------------CUUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 18345 0.69 0.639875
Target:  5'- gGCCGAGcCUGCcgAGgAGGAGgagccuGCGCCGGu -3'
miRNA:   3'- -CGGCUC-GAUG--UCgUCUUC------UGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 16537 0.66 0.823609
Target:  5'- cGCCGAGgUugAGCAcaucaugauGAcGcCACCGGa -3'
miRNA:   3'- -CGGCUCgAugUCGU---------CUuCuGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 16374 0.66 0.814502
Target:  5'- uGCCG-GUggacCAGCAGGgcAGcUACCGGGc -3'
miRNA:   3'- -CGGCuCGau--GUCGUCU--UCuGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.