Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19183 | 3' | -54.8 | NC_004684.1 | + | 15900 | 0.7 | 0.553797 |
Target: 5'- aGCCGcagGGCguccCGGCAGAGGccuacccgGCACCGGa -3' miRNA: 3'- -CGGC---UCGau--GUCGUCUUC--------UGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 15778 | 0.68 | 0.661506 |
Target: 5'- cGCCGAGC-GCGGCcaAGGAaCACCuGGa -3' miRNA: 3'- -CGGCUCGaUGUCGucUUCU-GUGGcCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 15521 | 0.67 | 0.766389 |
Target: 5'- gGCCGAggccuuggagguGCUggaGguGCAGGAGaucgcGCACUGGGu -3' miRNA: 3'- -CGGCU------------CGA---UguCGUCUUC-----UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 15314 | 0.66 | 0.776321 |
Target: 5'- gGCCGguGGCaUGgAGCGGGcguucaAGGcCGCCGGGu -3' miRNA: 3'- -CGGC--UCG-AUgUCGUCU------UCU-GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 15154 | 0.69 | 0.629045 |
Target: 5'- cGCCGcuguGGCaccACGGCcuGAucGACGCCGGGg -3' miRNA: 3'- -CGGC----UCGa--UGUCGu-CUu-CUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 14375 | 0.66 | 0.814502 |
Target: 5'- cGCCGA-CU--GGCuGAccGACACCGGGc -3' miRNA: 3'- -CGGCUcGAugUCGuCUu-CUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 14131 | 0.67 | 0.735832 |
Target: 5'- aGCCGAug-ACAcCGGAGcGCGCCGGGa -3' miRNA: 3'- -CGGCUcgaUGUcGUCUUcUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 12968 | 0.69 | 0.607401 |
Target: 5'- cGCCGAcCgGCGGCAGGcaacaccgAG-CGCCGGGc -3' miRNA: 3'- -CGGCUcGaUGUCGUCU--------UCuGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 11455 | 0.69 | 0.650699 |
Target: 5'- gGCCGAcGCgcaccACGGUcaccGAGGACGgCCGGGu -3' miRNA: 3'- -CGGCU-CGa----UGUCGu---CUUCUGU-GGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 9914 | 0.72 | 0.442186 |
Target: 5'- uCCGGGCUGaccgaGGCGGugauuGugGCCGGGc -3' miRNA: 3'- cGGCUCGAUg----UCGUCuu---CugUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 9320 | 0.66 | 0.814502 |
Target: 5'- cGCCGAGgaACAGgAcGggGACGaggaggccuCCGGu -3' miRNA: 3'- -CGGCUCgaUGUCgU-CuuCUGU---------GGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 9198 | 0.67 | 0.72543 |
Target: 5'- gGuuGGGC-GCAGUGGGcgcGugACCGGGu -3' miRNA: 3'- -CggCUCGaUGUCGUCUu--CugUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 8970 | 0.7 | 0.585839 |
Target: 5'- gGCCGgaGGCaACGGCGGGGuuccGGCGgCCGGGc -3' miRNA: 3'- -CGGC--UCGaUGUCGUCUU----CUGU-GGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 8830 | 0.66 | 0.795743 |
Target: 5'- cGCaaGGGCUACAGCAaGGAGAagGCCGc- -3' miRNA: 3'- -CGg-CUCGAUGUCGU-CUUCUg-UGGCcc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 8145 | 0.74 | 0.378124 |
Target: 5'- uGCuCGGG-UGCAGCAGAucgucaaccAGAuCGCCGGGg -3' miRNA: 3'- -CG-GCUCgAUGUCGUCU---------UCU-GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7974 | 0.66 | 0.80521 |
Target: 5'- cCCGGaCggACGGCAgGAGGACGCCuGGa -3' miRNA: 3'- cGGCUcGa-UGUCGU-CUUCUGUGGcCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7785 | 0.71 | 0.532724 |
Target: 5'- gGUCGAGCauuggUGC-GCGGGAuGugACCGGGu -3' miRNA: 3'- -CGGCUCG-----AUGuCGUCUU-CugUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7633 | 0.68 | 0.714938 |
Target: 5'- aGCC-AGCUcGCcguGGCGGGcguGGugACCGGGu -3' miRNA: 3'- -CGGcUCGA-UG---UCGUCU---UCugUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7135 | 0.66 | 0.795743 |
Target: 5'- cGCCGAGgUACAccCGGAAGGuggccaccgcCugCGGGu -3' miRNA: 3'- -CGGCUCgAUGUc-GUCUUCU----------GugGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 6838 | 0.66 | 0.80521 |
Target: 5'- gGUCGAGUUcgaGGguGucgacGGCACCGGGc -3' miRNA: 3'- -CGGCUCGAug-UCguCuu---CUGUGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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