miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 4504 0.77 0.237762
Target:  5'- cGCCGAGCUgGCGGCcaccguGGAC-CCGGGg -3'
miRNA:   3'- -CGGCUCGA-UGUCGucu---UCUGuGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6167 0.81 0.128845
Target:  5'- gGCC-AGCgUGCGGCGGuAGGCACCGGGc -3'
miRNA:   3'- -CGGcUCG-AUGUCGUCuUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 30022 1.13 0.000798
Target:  5'- gGCCGAGCUACAGCAGAAGACACCGGGg -3'
miRNA:   3'- -CGGCUCGAUGUCGUCUUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 31870 0.72 0.46159
Target:  5'- -gCGAGCUGCccGCcGAcgugcugguGGACGCCGGGa -3'
miRNA:   3'- cgGCUCGAUGu-CGuCU---------UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 540 0.71 0.491509
Target:  5'- cCCG-GCgaaaGGCcuGGAGGGCACCGGGu -3'
miRNA:   3'- cGGCuCGaug-UCG--UCUUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 11455 0.69 0.650699
Target:  5'- gGCCGAcGCgcaccACGGUcaccGAGGACGgCCGGGu -3'
miRNA:   3'- -CGGCU-CGa----UGUCGu---CUUCUGU-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 42948 0.69 0.650699
Target:  5'- cGCUuguGGCUGCuGUGGuuGugGCCGGGg -3'
miRNA:   3'- -CGGc--UCGAUGuCGUCuuCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 53736 0.69 0.639875
Target:  5'- uGCCGGGUUcgACGGcCAGGA-ACACCGaGGu -3'
miRNA:   3'- -CGGCUCGA--UGUC-GUCUUcUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 26988 0.69 0.633377
Target:  5'- gGCCGGuGCgagcGCGGCGGgcGcggcgaucaacagccAGGCACCGGGu -3'
miRNA:   3'- -CGGCU-CGa---UGUCGUC--U---------------UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 24581 0.69 0.630128
Target:  5'- uGCCGGGCgagcacguccugacgACAGCGGAcguGGCGCgcaUGGGc -3'
miRNA:   3'- -CGGCUCGa--------------UGUCGUCUu--CUGUG---GCCC- -5'
19183 3' -54.8 NC_004684.1 + 63726 0.69 0.618217
Target:  5'- uGCCGGGCcACcGUAcGAugacccGGCACCGGGc -3'
miRNA:   3'- -CGGCUCGaUGuCGU-CUu-----CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 12968 0.69 0.607401
Target:  5'- cGCCGAcCgGCGGCAGGcaacaccgAG-CGCCGGGc -3'
miRNA:   3'- -CGGCUcGaUGUCGUCU--------UCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 32190 0.7 0.585839
Target:  5'- cGCCGucGUUcCAGCAGAucGGCAcguCCGGGa -3'
miRNA:   3'- -CGGCu-CGAuGUCGUCUu-CUGU---GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 28081 0.7 0.564427
Target:  5'- gGCCGGGCcGCcGCGcGAcccGCACCGGGu -3'
miRNA:   3'- -CGGCUCGaUGuCGU-CUuc-UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15900 0.7 0.553797
Target:  5'- aGCCGcagGGCguccCGGCAGAGGccuacccgGCACCGGa -3'
miRNA:   3'- -CGGC---UCGau--GUCGUCUUC--------UGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 64534 0.71 0.532724
Target:  5'- cGCCcAGCggcuCGGCGGccuuGGugACCGGGu -3'
miRNA:   3'- -CGGcUCGau--GUCGUCu---UCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6070 0.71 0.532724
Target:  5'- cGCCGcGCU--GGUAGccGAUGCCGGGg -3'
miRNA:   3'- -CGGCuCGAugUCGUCuuCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 28802 0.71 0.501682
Target:  5'- uCCGAGCUGguGCucGAcgguGugACCGGGc -3'
miRNA:   3'- cGGCUCGAUguCGu-CUu---CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 47782 0.66 0.823609
Target:  5'- cGCCGAGCgucaccgcCAGCAccucGGcCGCCGGa -3'
miRNA:   3'- -CGGCUCGau------GUCGUcu--UCuGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 20230 0.76 0.276716
Target:  5'- gGCCGccGCUACGGUgcuccuGGGCACCGGGg -3'
miRNA:   3'- -CGGCu-CGAUGUCGucu---UCUGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.