Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19183 | 3' | -54.8 | NC_004684.1 | + | 18846 | 0.69 | 0.636626 |
Target: 5'- gGCCGAGgUGuggcaggagguCGGCAacuacaucauccgcGAGGGCAUCGGGu -3' miRNA: 3'- -CGGCUCgAU-----------GUCGU--------------CUUCUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 29819 | 0.69 | 0.618217 |
Target: 5'- uGCCGGGCaccucCAGCucccGGuACACCGGGu -3' miRNA: 3'- -CGGCUCGau---GUCGucu-UC-UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 58765 | 0.71 | 0.501682 |
Target: 5'- uGCCGAGgauCGGCGGugccGGuGCACCGGGc -3' miRNA: 3'- -CGGCUCgauGUCGUCu---UC-UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 58654 | 0.75 | 0.305416 |
Target: 5'- cGCCGGGC-GCGGCGGcgaACAUCGGGa -3' miRNA: 3'- -CGGCUCGaUGUCGUCuucUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 25936 | 0.67 | 0.756322 |
Target: 5'- cGCCGGGgU-CAGCccacuGACACCGGcGg -3' miRNA: 3'- -CGGCUCgAuGUCGucuu-CUGUGGCC-C- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 45593 | 0.68 | 0.692661 |
Target: 5'- cGCCGAccgucuuGCUGguGUAGGucGGGuCAUCGGGa -3' miRNA: 3'- -CGGCU-------CGAUguCGUCU--UCU-GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 30633 | 0.7 | 0.575111 |
Target: 5'- aCCGGGCgcggcccugGCGGCGucAG-CGCCGGGa -3' miRNA: 3'- cGGCUCGa--------UGUCGUcuUCuGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 54435 | 0.75 | 0.305416 |
Target: 5'- cGCCGcGU--CGGCGGGAG-CACCGGGg -3' miRNA: 3'- -CGGCuCGauGUCGUCUUCuGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 43940 | 0.68 | 0.672287 |
Target: 5'- uGUCGGGCauggaggcCAGCAGAucGGccaccgugcgcaGCACCGGGa -3' miRNA: 3'- -CGGCUCGau------GUCGUCU--UC------------UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 20230 | 0.76 | 0.276716 |
Target: 5'- gGCCGccGCUACGGUgcuccuGGGCACCGGGg -3' miRNA: 3'- -CGGCu-CGAUGUCGucu---UCUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 8970 | 0.7 | 0.585839 |
Target: 5'- gGCCGgaGGCaACGGCGGGGuuccGGCGgCCGGGc -3' miRNA: 3'- -CGGC--UCGaUGUCGUCUU----CUGU-GGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 18345 | 0.69 | 0.639875 |
Target: 5'- gGCCGAGcCUGCcgAGgAGGAGgagccuGCGCCGGu -3' miRNA: 3'- -CGGCUC-GAUG--UCgUCUUC------UGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7785 | 0.71 | 0.532724 |
Target: 5'- gGUCGAGCauuggUGC-GCGGGAuGugACCGGGu -3' miRNA: 3'- -CGGCUCG-----AUGuCGUCUU-CugUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 22868 | 0.71 | 0.501682 |
Target: 5'- uCCGGGCcaccACGGCGGccAAGACGCUGGa -3' miRNA: 3'- cGGCUCGa---UGUCGUC--UUCUGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 27719 | 0.72 | 0.471459 |
Target: 5'- gGCCGAGCgcgAGCAcGAGGCACgCGGa -3' miRNA: 3'- -CGGCUCGaugUCGUcUUCUGUG-GCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 24772 | 0.73 | 0.386888 |
Target: 5'- aCCG-GCgGCGGCGGggGAggUGCCGGGu -3' miRNA: 3'- cGGCuCGaUGUCGUCuuCU--GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 21553 | 0.67 | 0.766389 |
Target: 5'- -aCGAGC-GCGGCAugaccgccGAGGccguCACCGGGu -3' miRNA: 3'- cgGCUCGaUGUCGU--------CUUCu---GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 51124 | 0.67 | 0.756322 |
Target: 5'- cGUCGGGCc-CGGCGcGA--ACACCGGGc -3' miRNA: 3'- -CGGCUCGauGUCGU-CUucUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 14131 | 0.67 | 0.735832 |
Target: 5'- aGCCGAug-ACAcCGGAGcGCGCCGGGa -3' miRNA: 3'- -CGGCUcgaUGUcGUCUUcUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7633 | 0.68 | 0.714938 |
Target: 5'- aGCC-AGCUcGCcguGGCGGGcguGGugACCGGGu -3' miRNA: 3'- -CGGcUCGA-UG---UCGUCU---UCugUGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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