miRNA display CGI


Results 81 - 100 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 9198 0.67 0.72543
Target:  5'- gGuuGGGC-GCAGUGGGcgcGugACCGGGu -3'
miRNA:   3'- -CggCUCGaUGUCGUCUu--CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 27324 0.66 0.776321
Target:  5'- gGCC-AGCUuugacgACGGCGGuaucgccguGGGCACCGGc -3'
miRNA:   3'- -CGGcUCGA------UGUCGUCu--------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 57901 0.66 0.786109
Target:  5'- gGCCGGGCUGa-----AGGugGCCGGGc -3'
miRNA:   3'- -CGGCUCGAUgucgucUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 57558 0.66 0.786109
Target:  5'- cGCCGAGCUGCGcCGGuuggccGACAUCGc- -3'
miRNA:   3'- -CGGCUCGAUGUcGUCuu----CUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 20546 0.66 0.795743
Target:  5'- gGCCaGGCauucgucCAGCuauAGGAGGCACCGuGGa -3'
miRNA:   3'- -CGGcUCGau-----GUCG---UCUUCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 19335 0.66 0.795743
Target:  5'- cGCCGuGGCcg-AGCGGGAGGCGCUGa- -3'
miRNA:   3'- -CGGC-UCGaugUCGUCUUCUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 7974 0.66 0.80521
Target:  5'- cCCGGaCggACGGCAgGAGGACGCCuGGa -3'
miRNA:   3'- cGGCUcGa-UGUCGU-CUUCUGUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 62898 0.66 0.80521
Target:  5'- uGCCGuuGCcACGGCGGGccAGGCccugGCCGGu -3'
miRNA:   3'- -CGGCu-CGaUGUCGUCU--UCUG----UGGCCc -5'
19183 3' -54.8 NC_004684.1 + 9320 0.66 0.814502
Target:  5'- cGCCGAGgaACAGgAcGggGACGaggaggccuCCGGu -3'
miRNA:   3'- -CGGCUCgaUGUCgU-CuuCUGU---------GGCCc -5'
19183 3' -54.8 NC_004684.1 + 26853 0.66 0.776321
Target:  5'- gGUCGAGCaccaGCgAGCAGGAGGCGgCGcaGGa -3'
miRNA:   3'- -CGGCUCGa---UG-UCGUCUUCUGUgGC--CC- -5'
19183 3' -54.8 NC_004684.1 + 65884 0.66 0.773356
Target:  5'- cGuuGAGCgcgGCGcGCAGGuuGGccaccagggccgccGCACCGGGc -3'
miRNA:   3'- -CggCUCGa--UGU-CGUCU--UC--------------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 41321 0.67 0.766389
Target:  5'- -aUGGGCUACGGCAccgcgaccGccGACGgCCGGGc -3'
miRNA:   3'- cgGCUCGAUGUCGU--------CuuCUGU-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 24839 0.67 0.72543
Target:  5'- --aGGGCgGCAGCGGuAGcgcCACCGGGc -3'
miRNA:   3'- cggCUCGaUGUCGUCuUCu--GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6835 0.67 0.72543
Target:  5'- aGCUGGcCUACGGCgcgaaGGgcGACGCCGuGGu -3'
miRNA:   3'- -CGGCUcGAUGUCG-----UCuuCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 1813 0.67 0.729603
Target:  5'- cGCCGgugucaucGGcCUGCucGCAGAAGAacaucagcggaccaaCGCCGGGc -3'
miRNA:   3'- -CGGC--------UC-GAUGu-CGUCUUCU---------------GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 19536 0.67 0.746133
Target:  5'- cGCC-AGCUGCGGguG----CGCCGGGc -3'
miRNA:   3'- -CGGcUCGAUGUCguCuucuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 31091 0.67 0.746133
Target:  5'- cGCCGAGg-GCuGGCAGGacgccgcgcAGGCGCUGGa -3'
miRNA:   3'- -CGGCUCgaUG-UCGUCU---------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 66161 0.67 0.746133
Target:  5'- aCCGGGUUGCuGGCAGAuccaGCCGGu -3'
miRNA:   3'- cGGCUCGAUG-UCGUCUucugUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 64756 0.67 0.756322
Target:  5'- gGCCGAGCUGguGCc--AGGCGUCGGu -3'
miRNA:   3'- -CGGCUCGAUguCGucuUCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 58971 0.67 0.760364
Target:  5'- cGCCGAGCUGCcGCGcuGGuuaccguucggcauCGCCGGa -3'
miRNA:   3'- -CGGCUCGAUGuCGUcuUCu-------------GUGGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.