miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 57901 0.66 0.786109
Target:  5'- gGCCGGGCUGa-----AGGugGCCGGGc -3'
miRNA:   3'- -CGGCUCGAUgucgucUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15314 0.66 0.776321
Target:  5'- gGCCGguGGCaUGgAGCGGGcguucaAGGcCGCCGGGu -3'
miRNA:   3'- -CGGC--UCG-AUgUCGUCU------UCU-GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 5607 0.66 0.776321
Target:  5'- gGCCGAGCUgGCGcGCAuGGugcuggagcuGGACGCCuGGu -3'
miRNA:   3'- -CGGCUCGA-UGU-CGU-CU----------UCUGUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 26853 0.66 0.776321
Target:  5'- gGUCGAGCaccaGCgAGCAGGAGGCGgCGcaGGa -3'
miRNA:   3'- -CGGCUCGa---UG-UCGUCUUCUGUgGC--CC- -5'
19183 3' -54.8 NC_004684.1 + 27324 0.66 0.776321
Target:  5'- gGCC-AGCUuugacgACGGCGGuaucgccguGGGCACCGGc -3'
miRNA:   3'- -CGGcUCGA------UGUCGUCu--------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 26929 0.66 0.776321
Target:  5'- cGCCGAGacccccgaGCAGCGGccgccuGGGCACCGc- -3'
miRNA:   3'- -CGGCUCga------UGUCGUCu-----UCUGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 67259 0.66 0.775335
Target:  5'- uCCGGGCUggcgucgcugaacACGGguGcAGGuguuGCGCCGGGc -3'
miRNA:   3'- cGGCUCGA-------------UGUCguC-UUC----UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 65884 0.66 0.773356
Target:  5'- cGuuGAGCgcgGCGcGCAGGuuGGccaccagggccgccGCACCGGGc -3'
miRNA:   3'- -CggCUCGa--UGU-CGUCU--UC--------------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 5666 0.67 0.766389
Target:  5'- uGCCucAGCcgUGGuCGGAGGugGCCGGGg -3'
miRNA:   3'- -CGGc-UCGauGUC-GUCUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15521 0.67 0.766389
Target:  5'- gGCCGAggccuuggagguGCUggaGguGCAGGAGaucgcGCACUGGGu -3'
miRNA:   3'- -CGGCU------------CGA---UguCGUCUUC-----UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 21553 0.67 0.766389
Target:  5'- -aCGAGC-GCGGCAugaccgccGAGGccguCACCGGGu -3'
miRNA:   3'- cgGCUCGaUGUCGU--------CUUCu---GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 41321 0.67 0.766389
Target:  5'- -aUGGGCUACGGCAccgcgaccGccGACGgCCGGGc -3'
miRNA:   3'- cgGCUCGAUGUCGU--------CuuCUGU-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 58971 0.67 0.760364
Target:  5'- cGCCGAGCUGCcGCGcuGGuuaccguucggcauCGCCGGa -3'
miRNA:   3'- -CGGCUCGAUGuCGUcuUCu-------------GUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 51124 0.67 0.756322
Target:  5'- cGUCGGGCc-CGGCGcGA--ACACCGGGc -3'
miRNA:   3'- -CGGCUCGauGUCGU-CUucUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 64756 0.67 0.756322
Target:  5'- gGCCGAGCUGguGCc--AGGCGUCGGu -3'
miRNA:   3'- -CGGCUCGAUguCGucuUCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 25936 0.67 0.756322
Target:  5'- cGCCGGGgU-CAGCccacuGACACCGGcGg -3'
miRNA:   3'- -CGGCUCgAuGUCGucuu-CUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 66161 0.67 0.746133
Target:  5'- aCCGGGUUGCuGGCAGAuccaGCCGGu -3'
miRNA:   3'- cGGCUCGAUG-UCGUCUucugUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 31091 0.67 0.746133
Target:  5'- cGCCGAGg-GCuGGCAGGacgccgcgcAGGCGCUGGa -3'
miRNA:   3'- -CGGCUCgaUG-UCGUCU---------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 19536 0.67 0.746133
Target:  5'- cGCC-AGCUGCGGguG----CGCCGGGc -3'
miRNA:   3'- -CGGcUCGAUGUCguCuucuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 14131 0.67 0.735832
Target:  5'- aGCCGAug-ACAcCGGAGcGCGCCGGGa -3'
miRNA:   3'- -CGGCUcgaUGUcGUCUUcUGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.