Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19183 | 5' | -63.8 | NC_004684.1 | + | 26674 | 0.69 | 0.216694 |
Target: 5'- cGCCgc--GCUGGUCgUCCCGGCCACc -3' miRNA: 3'- uCGGaccaUGGCCGG-AGGGCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 54668 | 0.69 | 0.206174 |
Target: 5'- cGGCCUGGUcCaCGGCCUCUggcgUGGCUuCUg -3' miRNA: 3'- -UCGGACCAuG-GCCGGAGG----GCCGGuGA- -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 20976 | 0.7 | 0.195607 |
Target: 5'- cGCCgGGacaUGCUGGCCguggacccgaccaUCCCGGCCAg- -3' miRNA: 3'- uCGGaCC---AUGGCCGG-------------AGGGCCGGUga -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 23002 | 0.7 | 0.193162 |
Target: 5'- cGGCCUGGgccgACUGGCCgccgucggcagcgauUUCCuGCCACg -3' miRNA: 3'- -UCGGACCa---UGGCCGG---------------AGGGcCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 23563 | 0.7 | 0.181794 |
Target: 5'- cGGCCUGG-ACa-GCCUgCCgGGCCGCg -3' miRNA: 3'- -UCGGACCaUGgcCGGA-GGgCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 5960 | 0.7 | 0.181334 |
Target: 5'- uGGCCgcgccGGUgagcgACCGGCCgagcaagUCCCGGCCugGCUc -3' miRNA: 3'- -UCGGa----CCA-----UGGCCGG-------AGGGCCGG--UGA- -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 56464 | 0.7 | 0.177235 |
Target: 5'- aGGCCUGGaGCacgaGGCCaaacugCUCGGCCugUa -3' miRNA: 3'- -UCGGACCaUGg---CCGGa-----GGGCCGGugA- -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 20237 | 0.71 | 0.168421 |
Target: 5'- cGCCUGGcgcGCCGGUacuaCUUCCGGCCcgGCg -3' miRNA: 3'- uCGGACCa--UGGCCG----GAGGGCCGG--UGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 37592 | 0.71 | 0.168421 |
Target: 5'- cGGCaucGGUACCGuGCgggCCCGGCCGCc -3' miRNA: 3'- -UCGga-CCAUGGC-CGga-GGGCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 41328 | 0.71 | 0.164163 |
Target: 5'- cGCCgaGGUGuuGGCCUcgaacucgccgcCCUGGCCGCc -3' miRNA: 3'- uCGGa-CCAUggCCGGA------------GGGCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 10649 | 0.71 | 0.164163 |
Target: 5'- uGGUCUGGUGCCGG-UUCCCGuGCUggcGCg -3' miRNA: 3'- -UCGGACCAUGGCCgGAGGGC-CGG---UGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 39655 | 0.71 | 0.160001 |
Target: 5'- -uCCaGGUACCGGCCUCCgCGuGCCuCg -3' miRNA: 3'- ucGGaCCAUGGCCGGAGG-GC-CGGuGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 41368 | 0.71 | 0.160001 |
Target: 5'- uGCUUGGUGaaguCCGGCaCguugaaCCCGGCCGCc -3' miRNA: 3'- uCGGACCAU----GGCCG-Ga-----GGGCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 66497 | 0.71 | 0.151963 |
Target: 5'- aGGCCuUGGcGgCGGCCUCgCgGGCCGCc -3' miRNA: 3'- -UCGG-ACCaUgGCCGGAG-GgCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 35096 | 0.71 | 0.148083 |
Target: 5'- cAGCCgucGGUGCCGGUCaccUCCGGUUACUu -3' miRNA: 3'- -UCGGa--CCAUGGCCGGa--GGGCCGGUGA- -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 1237 | 0.71 | 0.148083 |
Target: 5'- cGGCCUGGU--CGGUCgCCCGGCCcCg -3' miRNA: 3'- -UCGGACCAugGCCGGaGGGCCGGuGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 25766 | 0.71 | 0.144293 |
Target: 5'- cGGCCUGGcguCCGGCUcCaCCGGCgGCa -3' miRNA: 3'- -UCGGACCau-GGCCGGaG-GGCCGgUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 19551 | 0.71 | 0.144293 |
Target: 5'- cGCCgggcGGUGCCaGGUCUCCgGGCCugGCg -3' miRNA: 3'- uCGGa---CCAUGG-CCGGAGGgCCGG--UGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 25261 | 0.71 | 0.144293 |
Target: 5'- aGGCgCUGGagaaGCUgcgcaccaagGGCCUUCCGGCCACa -3' miRNA: 3'- -UCG-GACCa---UGG----------CCGGAGGGCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 39287 | 0.72 | 0.127979 |
Target: 5'- aGGCCUcgaaccgcaccacccGGUGCgGGUCgcgcggcggCCCGGCCACa -3' miRNA: 3'- -UCGGA---------------CCAUGgCCGGa--------GGGCCGGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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