miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 24764 0.66 0.348385
Target:  5'- uGGCa-GGgaagACCGGCa-CCgGGCCGCUg -3'
miRNA:   3'- -UCGgaCCa---UGGCCGgaGGgCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 25201 0.68 0.263437
Target:  5'- aGGCgCUGGcACCggguGGCUUCaCCGGCaCGCUg -3'
miRNA:   3'- -UCG-GACCaUGG----CCGGAG-GGCCG-GUGA- -5'
19183 5' -63.8 NC_004684.1 + 25261 0.71 0.144293
Target:  5'- aGGCgCUGGagaaGCUgcgcaccaagGGCCUUCCGGCCACa -3'
miRNA:   3'- -UCG-GACCa---UGG----------CCGGAGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25448 0.69 0.222124
Target:  5'- aGGCCguUGGUGCCGccguugaccGCCUUggucaCGGCCACg -3'
miRNA:   3'- -UCGG--ACCAUGGC---------CGGAGg----GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25766 0.71 0.144293
Target:  5'- cGGCCUGGcguCCGGCUcCaCCGGCgGCa -3'
miRNA:   3'- -UCGGACCau-GGCCGGaG-GGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 25870 0.66 0.356286
Target:  5'- gAGCUgcGGUGCCagGGCCUCguagCgGGCCAUg -3'
miRNA:   3'- -UCGGa-CCAUGG--CCGGAG----GgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25968 0.67 0.278975
Target:  5'- uGGCCaagcUGGUgcgcgaaggcaacccGCUGGCgCUCCUGGCgGCg -3'
miRNA:   3'- -UCGG----ACCA---------------UGGCCG-GAGGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 26263 0.66 0.359482
Target:  5'- gGGCCUGGaa--GGCCUCaaggauucggugaccUCGGCCAUc -3'
miRNA:   3'- -UCGGACCauggCCGGAG---------------GGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 26446 0.68 0.269824
Target:  5'- uGGCCcGGUguacGgCGGCacgCCUGGCCGCg -3'
miRNA:   3'- -UCGGaCCA----UgGCCGga-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 26674 0.69 0.216694
Target:  5'- cGCCgc--GCUGGUCgUCCCGGCCACc -3'
miRNA:   3'- uCGGaccaUGGCCGG-AGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 27348 0.66 0.318044
Target:  5'- cGCCgugGGcACCGGCaugaugCCCaaGGCCACc -3'
miRNA:   3'- uCGGa--CCaUGGCCGga----GGG--CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 28216 0.66 0.356286
Target:  5'- cAGCCUGcGcUACCuGGCCgcccaCCCGGagCACa -3'
miRNA:   3'- -UCGGAC-C-AUGG-CCGGa----GGGCCg-GUGa -5'
19183 5' -63.8 NC_004684.1 + 30060 1.06 0.000305
Target:  5'- gAGCCUGGUACCGGCCUCCCGGCCACUc -3'
miRNA:   3'- -UCGGACCAUGGCCGGAGGGCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 31484 0.66 0.34061
Target:  5'- gAGCCUcuUugCGGUCcaCCUGGCCGCg -3'
miRNA:   3'- -UCGGAccAugGCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 35096 0.71 0.148083
Target:  5'- cAGCCgucGGUGCCGGUCaccUCCGGUUACUu -3'
miRNA:   3'- -UCGGa--CCAUGGCCGGa--GGGCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 36079 0.66 0.356286
Target:  5'- cGuCCUGG--CUGGUCUgCCCGGUCACc -3'
miRNA:   3'- uC-GGACCauGGCCGGA-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 37592 0.71 0.168421
Target:  5'- cGGCaucGGUACCGuGCgggCCCGGCCGCc -3'
miRNA:   3'- -UCGga-CCAUGGC-CGga-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 39287 0.72 0.127979
Target:  5'- aGGCCUcgaaccgcaccacccGGUGCgGGUCgcgcggcggCCCGGCCACa -3'
miRNA:   3'- -UCGGA---------------CCAUGgCCGGa--------GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 39655 0.71 0.160001
Target:  5'- -uCCaGGUACCGGCCUCCgCGuGCCuCg -3'
miRNA:   3'- ucGGaCCAUGGCCGGAGG-GC-CGGuGa -5'
19183 5' -63.8 NC_004684.1 + 40377 0.67 0.276335
Target:  5'- gGGCCUcggcGGUGgCGGCCUUCggcaGGCCGg- -3'
miRNA:   3'- -UCGGA----CCAUgGCCGGAGGg---CCGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.