miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 54530 0.66 0.332961
Target:  5'- cGGCCUcggcGGUGgcggccUCGGCCUCCgCGaCCACg -3'
miRNA:   3'- -UCGGA----CCAU------GGCCGGAGG-GCcGGUGa -5'
19183 5' -63.8 NC_004684.1 + 54289 0.66 0.348385
Target:  5'- cGGCCgggGGUGCgcgcauCGGCC-CCCuuGGCgGCUg -3'
miRNA:   3'- -UCGGa--CCAUG------GCCGGaGGG--CCGgUGA- -5'
19183 5' -63.8 NC_004684.1 + 53728 0.68 0.263437
Target:  5'- cGGCaUGGUGCCGGgUUCgaCGGCCAg- -3'
miRNA:   3'- -UCGgACCAUGGCCgGAGg-GCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 52291 0.67 0.289733
Target:  5'- cGGCaaGGU--CGGCCUCCagggCGGCCACc -3'
miRNA:   3'- -UCGgaCCAugGCCGGAGG----GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 48519 0.73 0.117035
Target:  5'- cGCgCUGGUGCCcugagugcGGCCaCCCGGUCACc -3'
miRNA:   3'- uCG-GACCAUGG--------CCGGaGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 47424 0.67 0.303635
Target:  5'- -aCCUGGUGcuCCGGCaccaCCUGGUCGCg -3'
miRNA:   3'- ucGGACCAU--GGCCGga--GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 46566 0.72 0.126644
Target:  5'- cGCUUGGUGCCGGaUUCCCaGUCGCg -3'
miRNA:   3'- uCGGACCAUGGCCgGAGGGcCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 45232 0.73 0.117035
Target:  5'- cGCUUGGUGCUGGUCaggCCCGGCagccaGCg -3'
miRNA:   3'- uCGGACCAUGGCCGGa--GGGCCGg----UGa -5'
19183 5' -63.8 NC_004684.1 + 44543 0.67 0.276335
Target:  5'- aGGCCuugcUGGUcUUGGCCagCCCGGCCuGCa -3'
miRNA:   3'- -UCGG----ACCAuGGCCGGa-GGGCCGG-UGa -5'
19183 5' -63.8 NC_004684.1 + 42626 0.75 0.085024
Target:  5'- cGGCCcGGUGCCGGuCUUCCCuGCCAg- -3'
miRNA:   3'- -UCGGaCCAUGGCC-GGAGGGcCGGUga -5'
19183 5' -63.8 NC_004684.1 + 42323 0.66 0.34061
Target:  5'- aGGCCaccaacCCGGCCgcCCUGGCCACc -3'
miRNA:   3'- -UCGGaccau-GGCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 41368 0.71 0.160001
Target:  5'- uGCUUGGUGaaguCCGGCaCguugaaCCCGGCCGCc -3'
miRNA:   3'- uCGGACCAU----GGCCG-Ga-----GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 41328 0.71 0.164163
Target:  5'- cGCCgaGGUGuuGGCCUcgaacucgccgcCCUGGCCGCc -3'
miRNA:   3'- uCGGa-CCAUggCCGGA------------GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 41238 0.67 0.289733
Target:  5'- uGGCCUGGUACaccuuugaaGGCCUCCa-GCUg-- -3'
miRNA:   3'- -UCGGACCAUGg--------CCGGAGGgcCGGuga -5'
19183 5' -63.8 NC_004684.1 + 40656 0.66 0.332961
Target:  5'- gGGCCUGGccccGCCaGUCgcgCUCGGCCAg- -3'
miRNA:   3'- -UCGGACCa---UGGcCGGa--GGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 40377 0.67 0.276335
Target:  5'- gGGCCUcggcGGUGgCGGCCUUCggcaGGCCGg- -3'
miRNA:   3'- -UCGGA----CCAUgGCCGGAGGg---CCGGUga -5'
19183 5' -63.8 NC_004684.1 + 39655 0.71 0.160001
Target:  5'- -uCCaGGUACCGGCCUCCgCGuGCCuCg -3'
miRNA:   3'- ucGGaCCAUGGCCGGAGG-GC-CGGuGa -5'
19183 5' -63.8 NC_004684.1 + 39287 0.72 0.127979
Target:  5'- aGGCCUcgaaccgcaccacccGGUGCgGGUCgcgcggcggCCCGGCCACa -3'
miRNA:   3'- -UCGGA---------------CCAUGgCCGGa--------GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 37592 0.71 0.168421
Target:  5'- cGGCaucGGUACCGuGCgggCCCGGCCGCc -3'
miRNA:   3'- -UCGga-CCAUGGC-CGga-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 36079 0.66 0.356286
Target:  5'- cGuCCUGG--CUGGUCUgCCCGGUCACc -3'
miRNA:   3'- uC-GGACCauGGCCGGA-GGGCCGGUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.