miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 1237 0.71 0.148083
Target:  5'- cGGCCUGGU--CGGUCgCCCGGCCcCg -3'
miRNA:   3'- -UCGGACCAugGCCGGaGGGCCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 35096 0.71 0.148083
Target:  5'- cAGCCgucGGUGCCGGUCaccUCCGGUUACUu -3'
miRNA:   3'- -UCGGa--CCAUGGCCGGa--GGGCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 22275 0.68 0.251032
Target:  5'- cGCCUGGcGgCGGCCaaggCCCGcGCgGCg -3'
miRNA:   3'- uCGGACCaUgGCCGGa---GGGC-CGgUGa -5'
19183 5' -63.8 NC_004684.1 + 66833 0.68 0.245012
Target:  5'- cGGCCUuguccuccucGGUGgCGGCCUcgaccgCCUGGCCAg- -3'
miRNA:   3'- -UCGGA----------CCAUgGCCGGA------GGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 23677 0.69 0.221576
Target:  5'- cGGCCUGGUcgGCCcggaccagagcguGGCCUCCaaccugggCGGCgGCg -3'
miRNA:   3'- -UCGGACCA--UGG-------------CCGGAGG--------GCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 23002 0.7 0.193162
Target:  5'- cGGCCUGGgccgACUGGCCgccgucggcagcgauUUCCuGCCACg -3'
miRNA:   3'- -UCGGACCa---UGGCCGG---------------AGGGcCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 23563 0.7 0.181794
Target:  5'- cGGCCUGG-ACa-GCCUgCCgGGCCGCg -3'
miRNA:   3'- -UCGGACCaUGgcCGGA-GGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 5960 0.7 0.181334
Target:  5'- uGGCCgcgccGGUgagcgACCGGCCgagcaagUCCCGGCCugGCUc -3'
miRNA:   3'- -UCGGa----CCA-----UGGCCGG-------AGGGCCGG--UGA- -5'
19183 5' -63.8 NC_004684.1 + 56464 0.7 0.177235
Target:  5'- aGGCCUGGaGCacgaGGCCaaacugCUCGGCCugUa -3'
miRNA:   3'- -UCGGACCaUGg---CCGGa-----GGGCCGGugA- -5'
19183 5' -63.8 NC_004684.1 + 37592 0.71 0.168421
Target:  5'- cGGCaucGGUACCGuGCgggCCCGGCCGCc -3'
miRNA:   3'- -UCGga-CCAUGGC-CGga-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 20237 0.71 0.168421
Target:  5'- cGCCUGGcgcGCCGGUacuaCUUCCGGCCcgGCg -3'
miRNA:   3'- uCGGACCa--UGGCCG----GAGGGCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 39655 0.71 0.160001
Target:  5'- -uCCaGGUACCGGCCUCCgCGuGCCuCg -3'
miRNA:   3'- ucGGaCCAUGGCCGGAGG-GC-CGGuGa -5'
19183 5' -63.8 NC_004684.1 + 66497 0.71 0.151963
Target:  5'- aGGCCuUGGcGgCGGCCUCgCgGGCCGCc -3'
miRNA:   3'- -UCGG-ACCaUgGCCGGAG-GgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 39287 0.72 0.127979
Target:  5'- aGGCCUcgaaccgcaccacccGGUGCgGGUCgcgcggcggCCCGGCCACa -3'
miRNA:   3'- -UCGGA---------------CCAUGgCCGGa--------GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 48519 0.73 0.117035
Target:  5'- cGCgCUGGUGCCcugagugcGGCCaCCCGGUCACc -3'
miRNA:   3'- uCG-GACCAUGG--------CCGGaGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 42626 0.75 0.085024
Target:  5'- cGGCCcGGUGCCGGuCUUCCCuGCCAg- -3'
miRNA:   3'- -UCGGaCCAUGGCC-GGAGGGcCGGUga -5'
19183 5' -63.8 NC_004684.1 + 17352 0.75 0.076344
Target:  5'- uGGCCUGGaGCCaGGCa--CCGGCCACg -3'
miRNA:   3'- -UCGGACCaUGG-CCGgagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 1934 0.76 0.064898
Target:  5'- gGGCCUGGUACCGGCg-CacggUGGCCGCg -3'
miRNA:   3'- -UCGGACCAUGGCCGgaGg---GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 16460 0.76 0.061465
Target:  5'- cGCCUGGacgagGCCGGgCUgUCCGGCCACg -3'
miRNA:   3'- uCGGACCa----UGGCCgGA-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 18408 0.66 0.356286
Target:  5'- cGGCCagcagGGcACCGacgcGCCcgcCCCGGCCACc -3'
miRNA:   3'- -UCGGa----CCaUGGC----CGGa--GGGCCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.