miRNA display CGI


Results 41 - 60 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 20976 0.7 0.195607
Target:  5'- cGCCgGGacaUGCUGGCCguggacccgaccaUCCCGGCCAg- -3'
miRNA:   3'- uCGGaCC---AUGGCCGG-------------AGGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 52291 0.67 0.289733
Target:  5'- cGGCaaGGU--CGGCCUCCagggCGGCCACc -3'
miRNA:   3'- -UCGgaCCAugGCCGGAGG----GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 19604 0.66 0.356286
Target:  5'- cGGCCgaGGUGCUGGCggugacgCUCGGCgACa -3'
miRNA:   3'- -UCGGa-CCAUGGCCGga-----GGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 28216 0.66 0.356286
Target:  5'- cAGCCUGcGcUACCuGGCCgcccaCCCGGagCACa -3'
miRNA:   3'- -UCGGAC-C-AUGG-CCGGa----GGGCCg-GUGa -5'
19183 5' -63.8 NC_004684.1 + 26263 0.66 0.359482
Target:  5'- gGGCCUGGaa--GGCCUCaaggauucggugaccUCGGCCAUc -3'
miRNA:   3'- -UCGGACCauggCCGGAG---------------GGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25968 0.67 0.278975
Target:  5'- uGGCCaagcUGGUgcgcgaaggcaacccGCUGGCgCUCCUGGCgGCg -3'
miRNA:   3'- -UCGG----ACCA---------------UGGCCG-GAGGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 45232 0.73 0.117035
Target:  5'- cGCUUGGUGCUGGUCaggCCCGGCagccaGCg -3'
miRNA:   3'- uCGGACCAUGGCCGGa--GGGCCGg----UGa -5'
19183 5' -63.8 NC_004684.1 + 23056 0.66 0.356286
Target:  5'- cGGCCUGGccaaGCUGGCCaaCCGGUUcgACg -3'
miRNA:   3'- -UCGGACCa---UGGCCGGagGGCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 66904 0.66 0.348385
Target:  5'- cGGCCUucgGCgCGGCCUUggCGGCCACa -3'
miRNA:   3'- -UCGGAccaUG-GCCGGAGg-GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 67368 0.66 0.348385
Target:  5'- -cCCUGGUACC-GCC-CCCGGuguccggcuCCACg -3'
miRNA:   3'- ucGGACCAUGGcCGGaGGGCC---------GGUGa -5'
19183 5' -63.8 NC_004684.1 + 53728 0.68 0.263437
Target:  5'- cGGCaUGGUGCCGGgUUCgaCGGCCAg- -3'
miRNA:   3'- -UCGgACCAUGGCCgGAGg-GCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 60079 0.68 0.263437
Target:  5'- cGGCCc-GUGCgGGCCUucaCCgGGCCACc -3'
miRNA:   3'- -UCGGacCAUGgCCGGA---GGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25201 0.68 0.263437
Target:  5'- aGGCgCUGGcACCggguGGCUUCaCCGGCaCGCUg -3'
miRNA:   3'- -UCG-GACCaUGG----CCGGAG-GGCCG-GUGA- -5'
19183 5' -63.8 NC_004684.1 + 26446 0.68 0.269824
Target:  5'- uGGCCcGGUguacGgCGGCacgCCUGGCCGCg -3'
miRNA:   3'- -UCGGaCCA----UgGCCGga-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 40377 0.67 0.276335
Target:  5'- gGGCCUcggcGGUGgCGGCCUUCggcaGGCCGg- -3'
miRNA:   3'- -UCGGA----CCAUgGCCGGAGGg---CCGGUga -5'
19183 5' -63.8 NC_004684.1 + 66833 0.68 0.245012
Target:  5'- cGGCCUuguccuccucGGUGgCGGCCUcgaccgCCUGGCCAg- -3'
miRNA:   3'- -UCGGA----------CCAUgGCCGGA------GGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 66497 0.71 0.151963
Target:  5'- aGGCCuUGGcGgCGGCCUCgCgGGCCGCc -3'
miRNA:   3'- -UCGG-ACCaUgGCCGGAG-GgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 35096 0.71 0.148083
Target:  5'- cAGCCgucGGUGCCGGUCaccUCCGGUUACUu -3'
miRNA:   3'- -UCGGa--CCAUGGCCGGa--GGGCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 1237 0.71 0.148083
Target:  5'- cGGCCUGGU--CGGUCgCCCGGCCcCg -3'
miRNA:   3'- -UCGGACCAugGCCGGaGGGCCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 19551 0.71 0.144293
Target:  5'- cGCCgggcGGUGCCaGGUCUCCgGGCCugGCg -3'
miRNA:   3'- uCGGa---CCAUGG-CCGGAGGgCCGG--UGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.