miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 45232 0.73 0.117035
Target:  5'- cGCUUGGUGCUGGUCaggCCCGGCagccaGCg -3'
miRNA:   3'- uCGGACCAUGGCCGGa--GGGCCGg----UGa -5'
19183 5' -63.8 NC_004684.1 + 4897 0.73 0.111012
Target:  5'- cGGCCUGGUcgccACCGGCCU--CGGCgGCa -3'
miRNA:   3'- -UCGGACCA----UGGCCGGAggGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 66621 0.73 0.10811
Target:  5'- cAGCUUGGUGCCugcGGCCUUggUGGCCACg -3'
miRNA:   3'- -UCGGACCAUGG---CCGGAGg-GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 22275 0.68 0.251032
Target:  5'- cGCCUGGcGgCGGCCaaggCCCGcGCgGCg -3'
miRNA:   3'- uCGGACCaUgGCCGGa---GGGC-CGgUGa -5'
19183 5' -63.8 NC_004684.1 + 53728 0.68 0.263437
Target:  5'- cGGCaUGGUGCCGGgUUCgaCGGCCAg- -3'
miRNA:   3'- -UCGgACCAUGGCCgGAGg-GCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 60079 0.68 0.263437
Target:  5'- cGGCCc-GUGCgGGCCUucaCCgGGCCACc -3'
miRNA:   3'- -UCGGacCAUGgCCGGA---GGgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 54289 0.66 0.348385
Target:  5'- cGGCCgggGGUGCgcgcauCGGCC-CCCuuGGCgGCUg -3'
miRNA:   3'- -UCGGa--CCAUG------GCCGGaGGG--CCGgUGA- -5'
19183 5' -63.8 NC_004684.1 + 24764 0.66 0.348385
Target:  5'- uGGCa-GGgaagACCGGCa-CCgGGCCGCUg -3'
miRNA:   3'- -UCGgaCCa---UGGCCGgaGGgCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 11604 0.66 0.34526
Target:  5'- cGCCUGGacgacggcaccgaGCUGGCCg-UCGGCCGCc -3'
miRNA:   3'- uCGGACCa------------UGGCCGGagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 42323 0.66 0.34061
Target:  5'- aGGCCaccaacCCGGCCgcCCUGGCCACc -3'
miRNA:   3'- -UCGGaccau-GGCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 13975 0.66 0.34061
Target:  5'- cAGUCgcgcGGcGCaGGCCagCCCGGCCACc -3'
miRNA:   3'- -UCGGa---CCaUGgCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 9439 0.66 0.34061
Target:  5'- cGGCCaUGGUGgaGGCCcuggugUUCCGGgCGCUg -3'
miRNA:   3'- -UCGG-ACCAUggCCGG------AGGGCCgGUGA- -5'
19183 5' -63.8 NC_004684.1 + 58395 0.66 0.332961
Target:  5'- cGCgUGGa---GGCCUuggCCCGGCCGCc -3'
miRNA:   3'- uCGgACCauggCCGGA---GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 60292 0.66 0.332961
Target:  5'- uGGCCcGGUccucGgCGGCCUCCagGGCCuCg -3'
miRNA:   3'- -UCGGaCCA----UgGCCGGAGGg-CCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 40656 0.66 0.332961
Target:  5'- gGGCCUGGccccGCCaGUCgcgCUCGGCCAg- -3'
miRNA:   3'- -UCGGACCa---UGGcCGGa--GGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 62533 0.66 0.332203
Target:  5'- cAGCCUGGUcGCUGGCCagcagcucgUCCagcuuggccuuguCGGCCGg- -3'
miRNA:   3'- -UCGGACCA-UGGCCGG---------AGG-------------GCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 25968 0.67 0.278975
Target:  5'- uGGCCaagcUGGUgcgcgaaggcaacccGCUGGCgCUCCUGGCgGCg -3'
miRNA:   3'- -UCGG----ACCA---------------UGGCCG-GAGGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 40377 0.67 0.276335
Target:  5'- gGGCCUcggcGGUGgCGGCCUUCggcaGGCCGg- -3'
miRNA:   3'- -UCGGA----CCAUgGCCGGAGGg---CCGGUga -5'
19183 5' -63.8 NC_004684.1 + 26446 0.68 0.269824
Target:  5'- uGGCCcGGUguacGgCGGCacgCCUGGCCGCg -3'
miRNA:   3'- -UCGGaCCA----UgGCCGga-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25201 0.68 0.263437
Target:  5'- aGGCgCUGGcACCggguGGCUUCaCCGGCaCGCUg -3'
miRNA:   3'- -UCG-GACCaUGG----CCGGAG-GGCCG-GUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.