Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19183 | 5' | -63.8 | NC_004684.1 | + | 24764 | 0.66 | 0.348385 |
Target: 5'- uGGCa-GGgaagACCGGCa-CCgGGCCGCUg -3' miRNA: 3'- -UCGgaCCa---UGGCCGgaGGgCCGGUGA- -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 54289 | 0.66 | 0.348385 |
Target: 5'- cGGCCgggGGUGCgcgcauCGGCC-CCCuuGGCgGCUg -3' miRNA: 3'- -UCGGa--CCAUG------GCCGGaGGG--CCGgUGA- -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 62533 | 0.66 | 0.332203 |
Target: 5'- cAGCCUGGUcGCUGGCCagcagcucgUCCagcuuggccuuguCGGCCGg- -3' miRNA: 3'- -UCGGACCA-UGGCCGG---------AGG-------------GCCGGUga -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 60594 | 0.66 | 0.318044 |
Target: 5'- cGCCgcgcacGGUGCgcaGGCCggucaCCCGGCgCACg -3' miRNA: 3'- uCGGa-----CCAUGg--CCGGa----GGGCCG-GUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 27348 | 0.66 | 0.318044 |
Target: 5'- cGCCgugGGcACCGGCaugaugCCCaaGGCCACc -3' miRNA: 3'- uCGGa--CCaUGGCCGga----GGG--CCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 53728 | 0.68 | 0.263437 |
Target: 5'- cGGCaUGGUGCCGGgUUCgaCGGCCAg- -3' miRNA: 3'- -UCGgACCAUGGCCgGAGg-GCCGGUga -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 60079 | 0.68 | 0.263437 |
Target: 5'- cGGCCc-GUGCgGGCCUucaCCgGGCCACc -3' miRNA: 3'- -UCGGacCAUGgCCGGA---GGgCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 25201 | 0.68 | 0.263437 |
Target: 5'- aGGCgCUGGcACCggguGGCUUCaCCGGCaCGCUg -3' miRNA: 3'- -UCG-GACCaUGG----CCGGAG-GGCCG-GUGA- -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 26446 | 0.68 | 0.269824 |
Target: 5'- uGGCCcGGUguacGgCGGCacgCCUGGCCGCg -3' miRNA: 3'- -UCGGaCCA----UgGCCGga-GGGCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 40377 | 0.67 | 0.276335 |
Target: 5'- gGGCCUcggcGGUGgCGGCCUUCggcaGGCCGg- -3' miRNA: 3'- -UCGGA----CCAUgGCCGGAGGg---CCGGUga -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 25968 | 0.67 | 0.278975 |
Target: 5'- uGGCCaagcUGGUgcgcgaaggcaacccGCUGGCgCUCCUGGCgGCg -3' miRNA: 3'- -UCGG----ACCA---------------UGGCCG-GAGGGCCGgUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 24540 | 0.67 | 0.282971 |
Target: 5'- cGGCg-GuGUGCCgGGCCgcgauagcgUCCCGGCCAUg -3' miRNA: 3'- -UCGgaC-CAUGG-CCGG---------AGGGCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 41238 | 0.67 | 0.289733 |
Target: 5'- uGGCCUGGUACaccuuugaaGGCCUCCa-GCUg-- -3' miRNA: 3'- -UCGGACCAUGg--------CCGGAGGgcCGGuga -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 47424 | 0.67 | 0.303635 |
Target: 5'- -aCCUGGUGcuCCGGCaccaCCUGGUCGCg -3' miRNA: 3'- ucGGACCAU--GGCCGga--GGGCCGGUGa -5' |
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19183 | 5' | -63.8 | NC_004684.1 | + | 67368 | 0.66 | 0.348385 |
Target: 5'- -cCCUGGUACC-GCC-CCCGGuguccggcuCCACg -3' miRNA: 3'- ucGGACCAUGGcCGGaGGGCC---------GGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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