miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 9439 0.66 0.34061
Target:  5'- cGGCCaUGGUGgaGGCCcuggugUUCCGGgCGCUg -3'
miRNA:   3'- -UCGG-ACCAUggCCGG------AGGGCCgGUGA- -5'
19183 5' -63.8 NC_004684.1 + 15299 0.66 0.335243
Target:  5'- gGGCCUGGUcgacgugGCCGGUggcauggagcgggcgUUCaaGGCCGCc -3'
miRNA:   3'- -UCGGACCA-------UGGCCG---------------GAGggCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 58395 0.66 0.332961
Target:  5'- cGCgUGGa---GGCCUuggCCCGGCCGCc -3'
miRNA:   3'- uCGgACCauggCCGGA---GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 60292 0.66 0.332961
Target:  5'- uGGCCcGGUccucGgCGGCCUCCagGGCCuCg -3'
miRNA:   3'- -UCGGaCCA----UgGCCGGAGGg-CCGGuGa -5'
19183 5' -63.8 NC_004684.1 + 40656 0.66 0.332961
Target:  5'- gGGCCUGGccccGCCaGUCgcgCUCGGCCAg- -3'
miRNA:   3'- -UCGGACCa---UGGcCGGa--GGGCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 54530 0.66 0.332961
Target:  5'- cGGCCUcggcGGUGgcggccUCGGCCUCCgCGaCCACg -3'
miRNA:   3'- -UCGGA----CCAU------GGCCGGAGG-GCcGGUGa -5'
19183 5' -63.8 NC_004684.1 + 62533 0.66 0.332203
Target:  5'- cAGCCUGGUcGCUGGCCagcagcucgUCCagcuuggccuuguCGGCCGg- -3'
miRNA:   3'- -UCGGACCA-UGGCCGG---------AGG-------------GCCGGUga -5'
19183 5' -63.8 NC_004684.1 + 2072 0.66 0.325439
Target:  5'- uGCCUGGcGCUGGCCguggugcacagCgaGGCCGCc -3'
miRNA:   3'- uCGGACCaUGGCCGGa----------GggCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 19922 0.66 0.323207
Target:  5'- uGGaCCUGGgauacACCGGCCUaaccgagguggauaCCUgcuGGCCGCg -3'
miRNA:   3'- -UC-GGACCa----UGGCCGGA--------------GGG---CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 27348 0.66 0.318044
Target:  5'- cGCCgugGGcACCGGCaugaugCCCaaGGCCACc -3'
miRNA:   3'- uCGGa--CCaUGGCCGga----GGG--CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 60594 0.66 0.318044
Target:  5'- cGCCgcgcacGGUGCgcaGGCCggucaCCCGGCgCACg -3'
miRNA:   3'- uCGGa-----CCAUGg--CCGGa----GGGCCG-GUGa -5'
19183 5' -63.8 NC_004684.1 + 12592 0.67 0.310776
Target:  5'- cAGCCagGGUcAUCGG-CUCCUGGCgCGCg -3'
miRNA:   3'- -UCGGa-CCA-UGGCCgGAGGGCCG-GUGa -5'
19183 5' -63.8 NC_004684.1 + 5671 0.67 0.303635
Target:  5'- cAGCCgUGGUcggaGgUGGCCggggCCCGGCCu-- -3'
miRNA:   3'- -UCGG-ACCA----UgGCCGGa---GGGCCGGuga -5'
19183 5' -63.8 NC_004684.1 + 47424 0.67 0.303635
Target:  5'- -aCCUGGUGcuCCGGCaccaCCUGGUCGCg -3'
miRNA:   3'- ucGGACCAU--GGCCGga--GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 7895 0.67 0.302928
Target:  5'- cGCCcGGUGCUccguuggGGCCg-CUGGCCGCg -3'
miRNA:   3'- uCGGaCCAUGG-------CCGGagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 2889 0.67 0.296621
Target:  5'- uGCCUGGUGgCaGCCguUCCagaacgaGGCCACc -3'
miRNA:   3'- uCGGACCAUgGcCGG--AGGg------CCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 52291 0.67 0.289733
Target:  5'- cGGCaaGGU--CGGCCUCCagggCGGCCACc -3'
miRNA:   3'- -UCGgaCCAugGCCGGAGG----GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 41238 0.67 0.289733
Target:  5'- uGGCCUGGUACaccuuugaaGGCCUCCa-GCUg-- -3'
miRNA:   3'- -UCGGACCAUGg--------CCGGAGGgcCGGuga -5'
19183 5' -63.8 NC_004684.1 + 24540 0.67 0.282971
Target:  5'- cGGCg-GuGUGCCgGGCCgcgauagcgUCCCGGCCAUg -3'
miRNA:   3'- -UCGgaC-CAUGG-CCGG---------AGGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25968 0.67 0.278975
Target:  5'- uGGCCaagcUGGUgcgcgaaggcaacccGCUGGCgCUCCUGGCgGCg -3'
miRNA:   3'- -UCGG----ACCA---------------UGGCCG-GAGGGCCGgUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.