miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19188 3' -60.2 NC_004684.1 + 55158 0.66 0.5526
Target:  5'- gAUCGCCGccgucgGGCGGCACguACCGgaacCCGg -3'
miRNA:   3'- gUAGCGGCca----CCGCUGUG--UGGC----GGCg -5'
19188 3' -60.2 NC_004684.1 + 57958 0.66 0.5526
Target:  5'- -cUCGCugCGGcUGGUGcGCACGCUGCUGg -3'
miRNA:   3'- guAGCG--GCC-ACCGC-UGUGUGGCGGCg -5'
19188 3' -60.2 NC_004684.1 + 41973 0.66 0.5526
Target:  5'- gCAagGUCGGaggcaccccauUGGU-ACugGCCGCCGCu -3'
miRNA:   3'- -GUagCGGCC-----------ACCGcUGugUGGCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 2458 0.66 0.5526
Target:  5'- --cCGCCa--GGCG-CuCACCGCCGCc -3'
miRNA:   3'- guaGCGGccaCCGCuGuGUGGCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 46745 0.66 0.5526
Target:  5'- --gCGCCGGaccucUGGggucagcuCGACGCGCUGgCGCu -3'
miRNA:   3'- guaGCGGCC-----ACC--------GCUGUGUGGCgGCG- -5'
19188 3' -60.2 NC_004684.1 + 24707 0.66 0.5526
Target:  5'- gAUCGuuGaacUGGuUGGC-CACCGCCGUg -3'
miRNA:   3'- gUAGCggCc--ACC-GCUGuGUGGCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 44146 0.66 0.5526
Target:  5'- aGUUGCgUGGUGGCGuCGCGgaGCCa- -3'
miRNA:   3'- gUAGCG-GCCACCGCuGUGUggCGGcg -5'
19188 3' -60.2 NC_004684.1 + 46811 0.66 0.5526
Target:  5'- aGUC-CCcGUGGCGugcGCACACUGUCGg -3'
miRNA:   3'- gUAGcGGcCACCGC---UGUGUGGCGGCg -5'
19188 3' -60.2 NC_004684.1 + 62186 0.66 0.542426
Target:  5'- ---gGCCGaugaUGGCGaACACGuuGCCGUc -3'
miRNA:   3'- guagCGGCc---ACCGC-UGUGUggCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 15821 0.66 0.542426
Target:  5'- gGUCGCCGcc-GCGcagcGCGCACUGgCGCa -3'
miRNA:   3'- gUAGCGGCcacCGC----UGUGUGGCgGCG- -5'
19188 3' -60.2 NC_004684.1 + 36713 0.66 0.542426
Target:  5'- aCGUCGCCGGgGGUuacCGCAucgaccuguUCGCCGUc -3'
miRNA:   3'- -GUAGCGGCCaCCGcu-GUGU---------GGCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 22712 0.66 0.542426
Target:  5'- --aCGCCa---GCGACaucggcaucGCGCCGCCGCa -3'
miRNA:   3'- guaGCGGccacCGCUG---------UGUGGCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 55287 0.66 0.542426
Target:  5'- gGUCGggGGUuGCGugAUgGCCGCCGCg -3'
miRNA:   3'- gUAGCggCCAcCGCugUG-UGGCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 2261 0.66 0.542426
Target:  5'- gAUCaGCgCGGcGGCGG-GCAUUGCCGCc -3'
miRNA:   3'- gUAG-CG-GCCaCCGCUgUGUGGCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 15825 0.66 0.542426
Target:  5'- --aC-CCGGUGGCGcGCgGCAUCGCCa- -3'
miRNA:   3'- guaGcGGCCACCGC-UG-UGUGGCGGcg -5'
19188 3' -60.2 NC_004684.1 + 42702 0.66 0.542426
Target:  5'- --aCGCCuGGaaUGGuCGGCAggccuggaaccuCACCGCCGUc -3'
miRNA:   3'- guaGCGG-CC--ACC-GCUGU------------GUGGCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 38481 0.66 0.542426
Target:  5'- aCGUCGuCCGGUcgaucagcGGCGGuCGCcacgGCgCGCCGUu -3'
miRNA:   3'- -GUAGC-GGCCA--------CCGCU-GUG----UG-GCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 40423 0.66 0.542426
Target:  5'- ---gGCCuGGaUGGCGGCGuuggcCACCGCCuugGCa -3'
miRNA:   3'- guagCGG-CC-ACCGCUGU-----GUGGCGG---CG- -5'
19188 3' -60.2 NC_004684.1 + 22180 0.66 0.542426
Target:  5'- --gCGCCGcauG-GACGCGCUGCCGCu -3'
miRNA:   3'- guaGCGGCcacCgCUGUGUGGCGGCG- -5'
19188 3' -60.2 NC_004684.1 + 14760 0.66 0.541412
Target:  5'- --aUGCCGGUgauGGCGACgugcccgGCACCGaCCu- -3'
miRNA:   3'- guaGCGGCCA---CCGCUG-------UGUGGC-GGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.