miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19188 5' -54.7 NC_004684.1 + 64232 0.66 0.82948
Target:  5'- -gGCGUUGGCCUcGgccagGCGCUggguGUUGGCg -3'
miRNA:   3'- caUGCAGCCGGA-Ca----UGCGG----UAGCUGg -5'
19188 5' -54.7 NC_004684.1 + 33131 0.66 0.82948
Target:  5'- gGUGC-UCGGCau-UGCGCUGUCGAgCa -3'
miRNA:   3'- -CAUGcAGCCGgacAUGCGGUAGCUgG- -5'
19188 5' -54.7 NC_004684.1 + 60864 0.66 0.82948
Target:  5'- -gAUGUCGGCCgggagGcgaUGCGCaccuccUCGGCCu -3'
miRNA:   3'- caUGCAGCCGGa----C---AUGCGgu----AGCUGG- -5'
19188 5' -54.7 NC_004684.1 + 64190 0.66 0.82948
Target:  5'- -cACGUCGGCguugccgGUGUGCCGgaUCGACa -3'
miRNA:   3'- caUGCAGCCGga-----CAUGCGGU--AGCUGg -5'
19188 5' -54.7 NC_004684.1 + 23001 0.66 0.827705
Target:  5'- -----aCGGCCUGggccgacuggcCGCCGUCGGCa -3'
miRNA:   3'- caugcaGCCGGACau---------GCGGUAGCUGg -5'
19188 5' -54.7 NC_004684.1 + 66938 0.66 0.826814
Target:  5'- -gGCGaaGGCCUccgGCgcgaucucgccccaGCCGUCGACCu -3'
miRNA:   3'- caUGCagCCGGAca-UG--------------CGGUAGCUGG- -5'
19188 5' -54.7 NC_004684.1 + 10318 0.66 0.820526
Target:  5'- -gAUGUgCGcGCCgcaacgcaGgcCGCCAUCGACCc -3'
miRNA:   3'- caUGCA-GC-CGGa-------CauGCGGUAGCUGG- -5'
19188 5' -54.7 NC_004684.1 + 42561 0.66 0.820526
Target:  5'- -gGCuUCGGCgUGgcCGCCAagaaGACCa -3'
miRNA:   3'- caUGcAGCCGgACauGCGGUag--CUGG- -5'
19188 5' -54.7 NC_004684.1 + 49381 0.66 0.820526
Target:  5'- -aACGcCacGCCguaGU-CGCCAUCGACCu -3'
miRNA:   3'- caUGCaGc-CGGa--CAuGCGGUAGCUGG- -5'
19188 5' -54.7 NC_004684.1 + 42713 0.66 0.820526
Target:  5'- gGU-CGgcaGGCCUGgaaccucacCGCCGUCGGCg -3'
miRNA:   3'- -CAuGCag-CCGGACau-------GCGGUAGCUGg -5'
19188 5' -54.7 NC_004684.1 + 11022 0.66 0.820526
Target:  5'- -cACGgCGGCaguUACGUCAUCGGCg -3'
miRNA:   3'- caUGCaGCCGgacAUGCGGUAGCUGg -5'
19188 5' -54.7 NC_004684.1 + 19762 0.66 0.811382
Target:  5'- cUGCG-CGGCCUGccggugccCGCCGggggCGACa -3'
miRNA:   3'- cAUGCaGCCGGACau------GCGGUa---GCUGg -5'
19188 5' -54.7 NC_004684.1 + 2322 0.66 0.811382
Target:  5'- -cACGUCGGUgaccACGCCGUCuACCc -3'
miRNA:   3'- caUGCAGCCGgacaUGCGGUAGcUGG- -5'
19188 5' -54.7 NC_004684.1 + 9545 0.66 0.811382
Target:  5'- gGUGCGcCGGUUggagccgGUGCGCCGcgaacacgUGGCCg -3'
miRNA:   3'- -CAUGCaGCCGGa------CAUGCGGUa-------GCUGG- -5'
19188 5' -54.7 NC_004684.1 + 8695 0.66 0.811382
Target:  5'- cGUGCGUgaGGUCUGUuagcCGCacgGUCGACg -3'
miRNA:   3'- -CAUGCAg-CCGGACAu---GCGg--UAGCUGg -5'
19188 5' -54.7 NC_004684.1 + 36182 0.66 0.811382
Target:  5'- -gGCGUCGGCCagGU-CGUCuuccaGGCCc -3'
miRNA:   3'- caUGCAGCCGGa-CAuGCGGuag--CUGG- -5'
19188 5' -54.7 NC_004684.1 + 65708 0.66 0.810457
Target:  5'- aUGCGcgccagcUCGGCCUGgugggcgaaaaACGCCAcgaagUUGGCCu -3'
miRNA:   3'- cAUGC-------AGCCGGACa----------UGCGGU-----AGCUGG- -5'
19188 5' -54.7 NC_004684.1 + 33350 0.66 0.810457
Target:  5'- gGUGCaGUcCGGCCU---CGCCAUCGguuucccGCCg -3'
miRNA:   3'- -CAUG-CA-GCCGGAcauGCGGUAGC-------UGG- -5'
19188 5' -54.7 NC_004684.1 + 46008 0.66 0.802056
Target:  5'- -----cCGGCCacgGUGCGCaCGUCGuCCa -3'
miRNA:   3'- caugcaGCCGGa--CAUGCG-GUAGCuGG- -5'
19188 5' -54.7 NC_004684.1 + 29912 0.66 0.802056
Target:  5'- cGUACacgaGGCCUccuauacgGCGCUGUCGGCCc -3'
miRNA:   3'- -CAUGcag-CCGGAca------UGCGGUAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.