miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19197 3' -54 NC_004684.1 + 14732 0.66 0.808577
Target:  5'- gAGGUGcuggccaccUGGGaGCGCaaGCAUgCCGGUGAu -3'
miRNA:   3'- -UCUAU---------ACCCgCGCG--CGUAaGGUCACU- -5'
19197 3' -54 NC_004684.1 + 47332 0.66 0.798979
Target:  5'- cGGUGUGGGCGuCGaGCAUggccaCCAGg-- -3'
miRNA:   3'- uCUAUACCCGC-GCgCGUAa----GGUCacu -5'
19197 3' -54 NC_004684.1 + 9196 0.66 0.789205
Target:  5'- aAGGU-UGGGCGCaguggGCGCGUgacCgGGUGGg -3'
miRNA:   3'- -UCUAuACCCGCG-----CGCGUAa--GgUCACU- -5'
19197 3' -54 NC_004684.1 + 43807 0.68 0.706033
Target:  5'- cGGUgGUGGcGCGCGCGCAgcgaggucgCCAGg-- -3'
miRNA:   3'- uCUA-UACC-CGCGCGCGUaa-------GGUCacu -5'
19197 3' -54 NC_004684.1 + 65781 0.68 0.706033
Target:  5'- ---gGUGGGCGCGCGCA---CGGcGAc -3'
miRNA:   3'- ucuaUACCCGCGCGCGUaagGUCaCU- -5'
19197 3' -54 NC_004684.1 + 46110 0.68 0.706033
Target:  5'- cAGAUAcggccGGGCGCGCGUg--CCggGGUGGu -3'
miRNA:   3'- -UCUAUa----CCCGCGCGCGuaaGG--UCACU- -5'
19197 3' -54 NC_004684.1 + 48968 0.69 0.662327
Target:  5'- gGGGUGgccgGGGCGgGCGCG--UCGGUGc -3'
miRNA:   3'- -UCUAUa---CCCGCgCGCGUaaGGUCACu -5'
19197 3' -54 NC_004684.1 + 5571 0.69 0.651302
Target:  5'- ---gGUGGGCGCGCGCGaaaucgCCA-UGGa -3'
miRNA:   3'- ucuaUACCCGCGCGCGUaa----GGUcACU- -5'
19197 3' -54 NC_004684.1 + 26885 0.69 0.651302
Target:  5'- ----cUGGGCGUGCGCGUcaaCCAGg-- -3'
miRNA:   3'- ucuauACCCGCGCGCGUAa--GGUCacu -5'
19197 3' -54 NC_004684.1 + 58973 0.69 0.618161
Target:  5'- -----cGGGCGCGCGgGUUCCAc--- -3'
miRNA:   3'- ucuauaCCCGCGCGCgUAAGGUcacu -5'
19197 3' -54 NC_004684.1 + 9068 0.7 0.596112
Target:  5'- -----cGGGCGCGCcaugacccgGCGUcgCCGGUGAg -3'
miRNA:   3'- ucuauaCCCGCGCG---------CGUAa-GGUCACU- -5'
19197 3' -54 NC_004684.1 + 64863 0.7 0.552452
Target:  5'- uGGUGggGGGUGCGCGUugUCCGGUc- -3'
miRNA:   3'- uCUAUa-CCCGCGCGCGuaAGGUCAcu -5'
19197 3' -54 NC_004684.1 + 53825 0.72 0.448637
Target:  5'- -----cGGGCGUGCGC-UUCCAGgcugGAg -3'
miRNA:   3'- ucuauaCCCGCGCGCGuAAGGUCa---CU- -5'
19197 3' -54 NC_004684.1 + 33915 1 0.006553
Target:  5'- cAGAUAUGGGCGCGCGCA-UCCAGUGAc -3'
miRNA:   3'- -UCUAUACCCGCGCGCGUaAGGUCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.