Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19197 | 3' | -54 | NC_004684.1 | + | 14732 | 0.66 | 0.808577 |
Target: 5'- gAGGUGcuggccaccUGGGaGCGCaaGCAUgCCGGUGAu -3' miRNA: 3'- -UCUAU---------ACCCgCGCG--CGUAaGGUCACU- -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 47332 | 0.66 | 0.798979 |
Target: 5'- cGGUGUGGGCGuCGaGCAUggccaCCAGg-- -3' miRNA: 3'- uCUAUACCCGC-GCgCGUAa----GGUCacu -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 9196 | 0.66 | 0.789205 |
Target: 5'- aAGGU-UGGGCGCaguggGCGCGUgacCgGGUGGg -3' miRNA: 3'- -UCUAuACCCGCG-----CGCGUAa--GgUCACU- -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 43807 | 0.68 | 0.706033 |
Target: 5'- cGGUgGUGGcGCGCGCGCAgcgaggucgCCAGg-- -3' miRNA: 3'- uCUA-UACC-CGCGCGCGUaa-------GGUCacu -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 65781 | 0.68 | 0.706033 |
Target: 5'- ---gGUGGGCGCGCGCA---CGGcGAc -3' miRNA: 3'- ucuaUACCCGCGCGCGUaagGUCaCU- -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 46110 | 0.68 | 0.706033 |
Target: 5'- cAGAUAcggccGGGCGCGCGUg--CCggGGUGGu -3' miRNA: 3'- -UCUAUa----CCCGCGCGCGuaaGG--UCACU- -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 48968 | 0.69 | 0.662327 |
Target: 5'- gGGGUGgccgGGGCGgGCGCG--UCGGUGc -3' miRNA: 3'- -UCUAUa---CCCGCgCGCGUaaGGUCACu -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 5571 | 0.69 | 0.651302 |
Target: 5'- ---gGUGGGCGCGCGCGaaaucgCCA-UGGa -3' miRNA: 3'- ucuaUACCCGCGCGCGUaa----GGUcACU- -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 26885 | 0.69 | 0.651302 |
Target: 5'- ----cUGGGCGUGCGCGUcaaCCAGg-- -3' miRNA: 3'- ucuauACCCGCGCGCGUAa--GGUCacu -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 58973 | 0.69 | 0.618161 |
Target: 5'- -----cGGGCGCGCGgGUUCCAc--- -3' miRNA: 3'- ucuauaCCCGCGCGCgUAAGGUcacu -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 9068 | 0.7 | 0.596112 |
Target: 5'- -----cGGGCGCGCcaugacccgGCGUcgCCGGUGAg -3' miRNA: 3'- ucuauaCCCGCGCG---------CGUAa-GGUCACU- -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 64863 | 0.7 | 0.552452 |
Target: 5'- uGGUGggGGGUGCGCGUugUCCGGUc- -3' miRNA: 3'- uCUAUa-CCCGCGCGCGuaAGGUCAcu -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 53825 | 0.72 | 0.448637 |
Target: 5'- -----cGGGCGUGCGC-UUCCAGgcugGAg -3' miRNA: 3'- ucuauaCCCGCGCGCGuAAGGUCa---CU- -5' |
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19197 | 3' | -54 | NC_004684.1 | + | 33915 | 1 | 0.006553 |
Target: 5'- cAGAUAUGGGCGCGCGCA-UCCAGUGAc -3' miRNA: 3'- -UCUAUACCCGCGCGCGUaAGGUCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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