Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19197 | 5' | -54.4 | NC_004684.1 | + | 62004 | 0.68 | 0.693728 |
Target: 5'- -aCGccACGGGUAGGAUCGGCguuCCgGUGa -3' miRNA: 3'- gaGC--UGUCUAUCCUAGCCG---GGgUACc -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 61334 | 0.69 | 0.672287 |
Target: 5'- cCUCGGCGGcGUAGGuggCGGCCaggugaAUGGu -3' miRNA: 3'- -GAGCUGUC-UAUCCua-GCCGGgg----UACC- -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 60967 | 0.69 | 0.68303 |
Target: 5'- cCUCGugGcuGGUGGcGUCGGCCUCgGUGGu -3' miRNA: 3'- -GAGCugU--CUAUCcUAGCCGGGG-UACC- -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 59623 | 0.72 | 0.491509 |
Target: 5'- gCUCGACcacGGUgGGGGUCGGCCCgGUcaGGu -3' miRNA: 3'- -GAGCUGu--CUA-UCCUAGCCGGGgUA--CC- -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 58276 | 0.66 | 0.841228 |
Target: 5'- cCUCGGCGGu---GAU-GGCCCCAcGGu -3' miRNA: 3'- -GAGCUGUCuaucCUAgCCGGGGUaCC- -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 57434 | 0.67 | 0.766389 |
Target: 5'- -aCGGCGGcguUAGGAUCGGgCgCAUGu -3' miRNA: 3'- gaGCUGUCu--AUCCUAGCCgGgGUACc -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 49343 | 0.67 | 0.786109 |
Target: 5'- gUCGGCGcuGAcGGGAUCaGGCCcaggcuguCCAUGGc -3' miRNA: 3'- gAGCUGU--CUaUCCUAG-CCGG--------GGUACC- -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 45371 | 0.68 | 0.714938 |
Target: 5'- gUCGcgguuCAGGUcGGcGAgcacCGGCCCCAUGGc -3' miRNA: 3'- gAGCu----GUCUA-UC-CUa---GCCGGGGUACC- -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 42526 | 0.69 | 0.672287 |
Target: 5'- -gCGGCuuGAUGGGGgugccgaaCGGCCCgGUGGc -3' miRNA: 3'- gaGCUGu-CUAUCCUa-------GCCGGGgUACC- -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 42224 | 0.68 | 0.704367 |
Target: 5'- gUCGG-AGAUGGcGUCGGCaCCCAUGc -3' miRNA: 3'- gAGCUgUCUAUCcUAGCCG-GGGUACc -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 40146 | 0.68 | 0.750223 |
Target: 5'- -cCGACAgGAUGGGAUCGGUgaucgcggucagcggCCCgAUGa -3' miRNA: 3'- gaGCUGU-CUAUCCUAGCCG---------------GGG-UACc -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 33948 | 1.1 | 0.001524 |
Target: 5'- cCUCGACAGAUAGGAUCGGCCCCAUGGc -3' miRNA: 3'- -GAGCUGUCUAUCCUAGCCGGGGUACC- -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 28037 | 0.67 | 0.757335 |
Target: 5'- -cCGGCAGAgcgcgagaucaugccGGuGGUCGGCCCCGgcGGu -3' miRNA: 3'- gaGCUGUCUa--------------UC-CUAGCCGGGGUa-CC- -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 27344 | 0.66 | 0.814502 |
Target: 5'- -aCGACgAGAgccgugcgaggGGGAUCGGCCCgGUc- -3' miRNA: 3'- gaGCUG-UCUa----------UCCUAGCCGGGgUAcc -5' |
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19197 | 5' | -54.4 | NC_004684.1 | + | 7545 | 0.72 | 0.511945 |
Target: 5'- uUCGACGcGGUGcuGGAcCGGCCCCGggUGGc -3' miRNA: 3'- gAGCUGU-CUAU--CCUaGCCGGGGU--ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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