miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19200 3' -58.1 NC_004684.1 + 63010 0.69 0.375729
Target:  5'- cGAUAGaCCAGCUCGGC-CUccggggucgagaaGUCGUCGGa -3'
miRNA:   3'- -UUGUC-GGUCGAGCCGaGA-------------CGGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 41441 0.69 0.373126
Target:  5'- --uGGCCAGCUCGGCguugggcaccuugUUGCCGauguUCGGc -3'
miRNA:   3'- uugUCGGUCGAGCCGa------------GACGGU----AGCU- -5'
19200 3' -58.1 NC_004684.1 + 61792 0.69 0.367957
Target:  5'- uGCGcGCCAGCUCGGCc---CCGUCGGc -3'
miRNA:   3'- uUGU-CGGUCGAGCCGagacGGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 355 0.69 0.367957
Target:  5'- cGCAG-CAGCUCGGUggccagGCCAUCGu -3'
miRNA:   3'- uUGUCgGUCGAGCCGaga---CGGUAGCu -5'
19200 3' -58.1 NC_004684.1 + 48927 0.7 0.359452
Target:  5'- cGACAGCacCAGCUCGGU---GCCGUCGu -3'
miRNA:   3'- -UUGUCG--GUCGAGCCGagaCGGUAGCu -5'
19200 3' -58.1 NC_004684.1 + 6225 0.7 0.359452
Target:  5'- -uCGGCCAGCUgGGCg--GCCAggccuUCGAc -3'
miRNA:   3'- uuGUCGGUCGAgCCGagaCGGU-----AGCU- -5'
19200 3' -58.1 NC_004684.1 + 63552 0.7 0.334769
Target:  5'- -uCGGCCucCUCGGCcgCUGCCAUCa- -3'
miRNA:   3'- uuGUCGGucGAGCCGa-GACGGUAGcu -5'
19200 3' -58.1 NC_004684.1 + 56895 0.7 0.319015
Target:  5'- cGGCGGcCCAGUgcgUCGGCcgggUCuUGCCGUCGAu -3'
miRNA:   3'- -UUGUC-GGUCG---AGCCG----AG-ACGGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 49197 0.71 0.311349
Target:  5'- cGGCGGCCuGCUCGG-UCgGCCAgUCGGu -3'
miRNA:   3'- -UUGUCGGuCGAGCCgAGaCGGU-AGCU- -5'
19200 3' -58.1 NC_004684.1 + 37387 0.71 0.30457
Target:  5'- -uCGGCCAGCUCgGGCaggucaucguucacgCUGuCCAUCGAc -3'
miRNA:   3'- uuGUCGGUCGAG-CCGa--------------GAC-GGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 54958 0.71 0.303824
Target:  5'- cGCAGCCAGa-CGGUcgcucUCUGCgGUCGAa -3'
miRNA:   3'- uUGUCGGUCgaGCCG-----AGACGgUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 44390 0.71 0.289195
Target:  5'- cGGCGGCCAG-UCGGCcCagGCCGUUGAu -3'
miRNA:   3'- -UUGUCGGUCgAGCCGaGa-CGGUAGCU- -5'
19200 3' -58.1 NC_004684.1 + 44339 0.71 0.275125
Target:  5'- --uGGCCAGCUUGGCcagGCCGUCa- -3'
miRNA:   3'- uugUCGGUCGAGCCGagaCGGUAGcu -5'
19200 3' -58.1 NC_004684.1 + 36965 0.73 0.224291
Target:  5'- cGACGGCCAGUUCGGUUUcGCCGaCGc -3'
miRNA:   3'- -UUGUCGGUCGAGCCGAGaCGGUaGCu -5'
19200 3' -58.1 NC_004684.1 + 2459 0.79 0.091288
Target:  5'- gGGCGGCCAGCUCGGCg-UGCCGUa-- -3'
miRNA:   3'- -UUGUCGGUCGAGCCGagACGGUAgcu -5'
19200 3' -58.1 NC_004684.1 + 55781 0.79 0.08628
Target:  5'- cGACGGCCAGCUCGGU---GCCGUCGu -3'
miRNA:   3'- -UUGUCGGUCGAGCCGagaCGGUAGCu -5'
19200 3' -58.1 NC_004684.1 + 35128 1.06 0.000869
Target:  5'- cAACAGCCAGCUCGGCUCUGCCAUCGAc -3'
miRNA:   3'- -UUGUCGGUCGAGCCGAGACGGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.