miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19201 5' -59.1 NC_004684.1 + 43458 0.65 0.589277
Target:  5'- cGGGCGCGGcagcaggUGCggcggCAGCagGUGcGGCGggCg -3'
miRNA:   3'- -CCUGCGCC-------ACG-----GUCGa-CAC-CCGCaaG- -5'
19201 5' -59.1 NC_004684.1 + 46120 0.66 0.579809
Target:  5'- cGGGCGCGcGUGCCGGg-GUGGuuGa-- -3'
miRNA:   3'- -CCUGCGC-CACGGUCgaCACCcgCaag -5'
19201 5' -59.1 NC_004684.1 + 60690 0.66 0.579809
Target:  5'- aGGCGuCGGUGaucaCGGCcaugGUGGuGUGUUCc -3'
miRNA:   3'- cCUGC-GCCACg---GUCGa---CACC-CGCAAG- -5'
19201 5' -59.1 NC_004684.1 + 62022 0.66 0.569328
Target:  5'- gGGACGgGG-GCCacgggguugAGCgggGUGGGCaugUCa -3'
miRNA:   3'- -CCUGCgCCaCGG---------UCGa--CACCCGca-AG- -5'
19201 5' -59.1 NC_004684.1 + 22188 0.66 0.569328
Target:  5'- uGGACGCGcUGCC-GCUGgagcgcggcgGGGUGg-- -3'
miRNA:   3'- -CCUGCGCcACGGuCGACa---------CCCGCaag -5'
19201 5' -59.1 NC_004684.1 + 13443 0.66 0.569328
Target:  5'- --gUGCGGUGCuCAGCUGUGccuGGCc--- -3'
miRNA:   3'- ccuGCGCCACG-GUCGACAC---CCGcaag -5'
19201 5' -59.1 NC_004684.1 + 18600 0.66 0.548515
Target:  5'- uGGACGaUGGcuuugagGCCAGCgacUGGGCGa-- -3'
miRNA:   3'- -CCUGC-GCCa------CGGUCGac-ACCCGCaag -5'
19201 5' -59.1 NC_004684.1 + 39623 0.66 0.548515
Target:  5'- cGGGCGgGGUGUaCAGCcc-GGGCGa-- -3'
miRNA:   3'- -CCUGCgCCACG-GUCGacaCCCGCaag -5'
19201 5' -59.1 NC_004684.1 + 15311 0.66 0.538197
Target:  5'- cGugGcCGGUGgCAuGgaGcGGGCGUUCa -3'
miRNA:   3'- cCugC-GCCACgGU-CgaCaCCCGCAAG- -5'
19201 5' -59.1 NC_004684.1 + 54637 0.66 0.538197
Target:  5'- aGGACGgGGUGU----UGUGGGCGa-- -3'
miRNA:   3'- -CCUGCgCCACGgucgACACCCGCaag -5'
19201 5' -59.1 NC_004684.1 + 6863 0.66 0.538197
Target:  5'- cGugGUGGUGCUgcacuGGCUcugGGGCGaggUCg -3'
miRNA:   3'- cCugCGCCACGG-----UCGAca-CCCGCa--AG- -5'
19201 5' -59.1 NC_004684.1 + 36316 0.67 0.526924
Target:  5'- cGGugGaccaacaacucgcCGGUGCC-GCaGUGGGUGUa- -3'
miRNA:   3'- -CCugC-------------GCCACGGuCGaCACCCGCAag -5'
19201 5' -59.1 NC_004684.1 + 24497 0.67 0.487731
Target:  5'- cGGGgGCGGUGCC-GCaG-GGccgcGCGUUCg -3'
miRNA:   3'- -CCUgCGCCACGGuCGaCaCC----CGCAAG- -5'
19201 5' -59.1 NC_004684.1 + 13154 0.67 0.486744
Target:  5'- cGGCGCGGUGCCcuggaacAGCUGcUGGcCGa-- -3'
miRNA:   3'- cCUGCGCCACGG-------UCGAC-ACCcGCaag -5'
19201 5' -59.1 NC_004684.1 + 65706 0.67 0.486744
Target:  5'- cGAUGCGc-GCCAGCUcggccugGUGGGCGa-- -3'
miRNA:   3'- cCUGCGCcaCGGUCGA-------CACCCGCaag -5'
19201 5' -59.1 NC_004684.1 + 64712 0.67 0.477901
Target:  5'- gGGAUGCGGUGCCcggcGCUGaaaUGGuGCu--- -3'
miRNA:   3'- -CCUGCGCCACGGu---CGAC---ACC-CGcaag -5'
19201 5' -59.1 NC_004684.1 + 65759 0.67 0.477901
Target:  5'- cGGGCGuUGGccGCCGcGCgccgGUGGGCGcgCg -3'
miRNA:   3'- -CCUGC-GCCa-CGGU-CGa---CACCCGCaaG- -5'
19201 5' -59.1 NC_004684.1 + 24122 0.67 0.477901
Target:  5'- aGGACGUGGUGCgCGGCgacaUGGcCGUg- -3'
miRNA:   3'- -CCUGCGCCACG-GUCGac--ACCcGCAag -5'
19201 5' -59.1 NC_004684.1 + 24500 0.68 0.468169
Target:  5'- aGGugGCGGUcucgguGCCAGaggccGGGCGUg- -3'
miRNA:   3'- -CCugCGCCA------CGGUCgaca-CCCGCAag -5'
19201 5' -59.1 NC_004684.1 + 8496 0.68 0.468169
Target:  5'- gGGACGgcgagaCGGUGCCGuGCUGggauUGuGGCGUg- -3'
miRNA:   3'- -CCUGC------GCCACGGU-CGAC----AC-CCGCAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.