Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 57939 | 0.7 | 0.634596 |
|
Target: 5'- uUG-CCGAccgcCUGCGguGC-UCGCUGCg -3' miRNA: 3'- gACaGGCUu---GACGCguUGcAGCGACG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 59376 | 0.7 | 0.623657 |
|
Target: 5'- gUGUCCugGAACcGCccgGCGGCacaGUCGCUGCa -3' miRNA: 3'- gACAGG--CUUGaCG---CGUUG---CAGCGACG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 59689 | 0.74 | 0.398313 |
|
Target: 5'- cCUGcgCCGAGCUGCGCGggguGCGggugCGCauccUGCg -3' miRNA: 3'- -GACa-GGCUUGACGCGU----UGCa---GCG----ACG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 62585 | 0.71 | 0.558491 |
|
Target: 5'- uUGUCCucGAuCUGCGCGccggucaugGCGUCGC-GCa -3' miRNA: 3'- gACAGG--CUuGACGCGU---------UGCAGCGaCG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 63512 | 0.71 | 0.558491 |
|
Target: 5'- aUGUCUGAccaggccuuggcACUGCGCAGCGgCG-UGCc -3' miRNA: 3'- gACAGGCU------------UGACGCGUUGCaGCgACG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 63789 | 0.68 | 0.721169 |
|
Target: 5'- gUGUUCGGcgGCccagUGCGCGACGUacuccacgucccCGCUGUg -3' miRNA: 3'- gACAGGCU--UG----ACGCGUUGCA------------GCGACG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 63831 | 0.68 | 0.742159 |
|
Target: 5'- -gGUgCGGAUgGCGCGGCGcaCGCUGUc -3' miRNA: 3'- gaCAgGCUUGaCGCGUUGCa-GCGACG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 64753 | 0.66 | 0.829898 |
|
Target: 5'- gCUGgCCGAGCUgGUGCcaGGCGUCggucugGCUGUc -3' miRNA: 3'- -GACaGGCUUGA-CGCG--UUGCAG------CGACG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 66908 | 0.66 | 0.855813 |
|
Target: 5'- uUGUCgGuGCUGC-CGACcUCGCUGg -3' miRNA: 3'- gACAGgCuUGACGcGUUGcAGCGACg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home