Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 11831 | 0.67 | 0.811579 |
|
Target: 5'- gCUGUCCGGcgACUgGCGCGACuUCG--GCa -3' miRNA: 3'- -GACAGGCU--UGA-CGCGUUGcAGCgaCG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 9644 | 0.66 | 0.829898 |
|
Target: 5'- cCUGaCCGcucACUGCGCAGCuGcCGCcuggGCg -3' miRNA: 3'- -GACaGGCu--UGACGCGUUG-CaGCGa---CG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 8016 | 0.68 | 0.76271 |
|
Target: 5'- -gGUaggCGAGCUGCGUuauuACGUCgGCUGg -3' miRNA: 3'- gaCAg--GCUUGACGCGu---UGCAG-CGACg -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 7377 | 0.74 | 0.416756 |
|
Target: 5'- --aUCCGAGCUGUGCugguggauGCGccCGCUGCu -3' miRNA: 3'- gacAGGCUUGACGCGu-------UGCa-GCGACG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 7052 | 0.67 | 0.802135 |
|
Target: 5'- gCUGgCCGAAC-GCGCggUGaUCGC-GCu -3' miRNA: 3'- -GACaGGCUUGaCGCGuuGC-AGCGaCG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 6794 | 0.69 | 0.67823 |
|
Target: 5'- gUGaCCGGcCUGCGCAcCGUgCGCgGCg -3' miRNA: 3'- gACaGGCUuGACGCGUuGCA-GCGaCG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 5822 | 0.71 | 0.547787 |
|
Target: 5'- -cGUCCcAGCUGCGCGAg--UGCUGCc -3' miRNA: 3'- gaCAGGcUUGACGCGUUgcaGCGACG- -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 5604 | 0.67 | 0.782731 |
|
Target: 5'- -cGgggCCGAGCUggcGCGCAugGU-GCUGg -3' miRNA: 3'- gaCa--GGCUUGA---CGCGUugCAgCGACg -5' |
|||||||
| 19202 | 3' | -53.8 | NC_004684.1 | + | 1762 | 0.69 | 0.699829 |
|
Target: 5'- ---aCCgGAGCUGCGCG-CGUgGCUGg -3' miRNA: 3'- gacaGG-CUUGACGCGUuGCAgCGACg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home