Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 57097 | 0.68 | 0.752495 |
Target: 5'- -gGUgCGGGCgaccucugGCGCGacaccgGCGUCGCUGg -3' miRNA: 3'- gaCAgGCUUGa-------CGCGU------UGCAGCGACg -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 43245 | 0.66 | 0.838754 |
Target: 5'- cCUGcaCCgGAGCggUGCGCAGCGgguacggcUGCUGCg -3' miRNA: 3'- -GACa-GG-CUUG--ACGCGUUGCa-------GCGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 13778 | 0.66 | 0.855813 |
Target: 5'- gUGUCCGGGCcGCGCGugcucaagaGCGgCGCacUGUc -3' miRNA: 3'- gACAGGCUUGaCGCGU---------UGCaGCG--ACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 41698 | 0.66 | 0.855813 |
Target: 5'- aUG-CC-AGCUGCGCcACGcgCGUUGCc -3' miRNA: 3'- gACaGGcUUGACGCGuUGCa-GCGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 42781 | 0.66 | 0.855813 |
Target: 5'- cCUGgCCGcccaUGCGCGccACGUcCGCUGUc -3' miRNA: 3'- -GACaGGCuug-ACGCGU--UGCA-GCGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 54781 | 0.66 | 0.829898 |
Target: 5'- gUGcCCGcaAGgUGCGCGGCGUgGCggGCc -3' miRNA: 3'- gACaGGC--UUgACGCGUUGCAgCGa-CG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 66908 | 0.66 | 0.855813 |
Target: 5'- uUGUCgGuGCUGC-CGACcUCGCUGg -3' miRNA: 3'- gACAGgCuUGACGcGUUGcAGCGACg -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 7377 | 0.74 | 0.416756 |
Target: 5'- --aUCCGAGCUGUGCugguggauGCGccCGCUGCu -3' miRNA: 3'- gacAGGCUUGACGCGu-------UGCa-GCGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 59376 | 0.7 | 0.623657 |
Target: 5'- gUGUCCugGAACcGCccgGCGGCacaGUCGCUGCa -3' miRNA: 3'- gACAGG--CUUGaCG---CGUUG---CAGCGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 57939 | 0.7 | 0.634596 |
Target: 5'- uUG-CCGAccgcCUGCGguGC-UCGCUGCg -3' miRNA: 3'- gACaGGCUu---GACGCguUGcAGCGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 48022 | 0.69 | 0.656458 |
Target: 5'- cCUGcUCCGGgaaccGCUGCGCGaucagGCGgCGCaUGCg -3' miRNA: 3'- -GAC-AGGCU-----UGACGCGU-----UGCaGCG-ACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 14811 | 0.69 | 0.699829 |
Target: 5'- gCUGUccaCCGGACUGUGgGGCG-CGCcguggUGCg -3' miRNA: 3'- -GACA---GGCUUGACGCgUUGCaGCG-----ACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 11831 | 0.67 | 0.811579 |
Target: 5'- gCUGUCCGGcgACUgGCGCGACuUCG--GCa -3' miRNA: 3'- -GACAGGCU--UGA-CGCGUUGcAGCgaCG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 64753 | 0.66 | 0.829898 |
Target: 5'- gCUGgCCGAGCUgGUGCcaGGCGUCggucugGCUGUc -3' miRNA: 3'- -GACaGGCUUGA-CGCG--UUGCAG------CGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 8016 | 0.68 | 0.76271 |
Target: 5'- -gGUaggCGAGCUGCGUuauuACGUCgGCUGg -3' miRNA: 3'- gaCAg--GCUUGACGCGu---UGCAG-CGACg -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 37082 | 0.67 | 0.811579 |
Target: 5'- cCUGUUCGcGgUGCGCGAU---GCUGCg -3' miRNA: 3'- -GACAGGCuUgACGCGUUGcagCGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 25604 | 0.68 | 0.752495 |
Target: 5'- gUGggacgCCGGGCacaUGCGC-GCGaCGCUGCc -3' miRNA: 3'- gACa----GGCUUG---ACGCGuUGCaGCGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 12282 | 0.68 | 0.752495 |
Target: 5'- -gGcCCGuGCUGCGCAGCG-CGCcaacgGUg -3' miRNA: 3'- gaCaGGCuUGACGCGUUGCaGCGa----CG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 63831 | 0.68 | 0.742159 |
Target: 5'- -gGUgCGGAUgGCGCGGCGcaCGCUGUc -3' miRNA: 3'- gaCAgGCUUGaCGCGUUGCa-GCGACG- -5' |
|||||||
19202 | 3' | -53.8 | NC_004684.1 | + | 14738 | 0.68 | 0.742159 |
Target: 5'- -gGUCCGAGgaUGCGgGAcCGUCGCgGUu -3' miRNA: 3'- gaCAGGCUUg-ACGCgUU-GCAGCGaCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home