miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 3' -53.8 NC_004684.1 + 8016 0.68 0.76271
Target:  5'- -gGUaggCGAGCUGCGUuauuACGUCgGCUGg -3'
miRNA:   3'- gaCAg--GCUUGACGCGu---UGCAG-CGACg -5'
19202 3' -53.8 NC_004684.1 + 57097 0.68 0.752495
Target:  5'- -gGUgCGGGCgaccucugGCGCGacaccgGCGUCGCUGg -3'
miRNA:   3'- gaCAgGCUUGa-------CGCGU------UGCAGCGACg -5'
19202 3' -53.8 NC_004684.1 + 25604 0.68 0.752495
Target:  5'- gUGggacgCCGGGCacaUGCGC-GCGaCGCUGCc -3'
miRNA:   3'- gACa----GGCUUG---ACGCGuUGCaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 12282 0.68 0.752495
Target:  5'- -gGcCCGuGCUGCGCAGCG-CGCcaacgGUg -3'
miRNA:   3'- gaCaGGCuUGACGCGUUGCaGCGa----CG- -5'
19202 3' -53.8 NC_004684.1 + 63831 0.68 0.742159
Target:  5'- -gGUgCGGAUgGCGCGGCGcaCGCUGUc -3'
miRNA:   3'- gaCAgGCUUGaCGCGUUGCa-GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 14738 0.68 0.742159
Target:  5'- -gGUCCGAGgaUGCGgGAcCGUCGCgGUu -3'
miRNA:   3'- gaCAGGCUUg-ACGCgUU-GCAGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 34472 0.68 0.731713
Target:  5'- -gGUCaUGGuCUGUGCAGCGUCGCcgagGUc -3'
miRNA:   3'- gaCAG-GCUuGACGCGUUGCAGCGa---CG- -5'
19202 3' -53.8 NC_004684.1 + 63789 0.68 0.721169
Target:  5'- gUGUUCGGcgGCccagUGCGCGACGUacuccacgucccCGCUGUg -3'
miRNA:   3'- gACAGGCU--UG----ACGCGUUGCA------------GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 1762 0.69 0.699829
Target:  5'- ---aCCgGAGCUGCGCG-CGUgGCUGg -3'
miRNA:   3'- gacaGG-CUUGACGCGUuGCAgCGACg -5'
19202 3' -53.8 NC_004684.1 + 14811 0.69 0.699829
Target:  5'- gCUGUccaCCGGACUGUGgGGCG-CGCcguggUGCg -3'
miRNA:   3'- -GACA---GGCUUGACGCgUUGCaGCG-----ACG- -5'
19202 3' -53.8 NC_004684.1 + 6794 0.69 0.67823
Target:  5'- gUGaCCGGcCUGCGCAcCGUgCGCgGCg -3'
miRNA:   3'- gACaGGCUuGACGCGUuGCA-GCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 31544 0.69 0.67823
Target:  5'- cCUGcCCgcGAACUGgacCGCgAGCGUCGCUGa -3'
miRNA:   3'- -GACaGG--CUUGAC---GCG-UUGCAGCGACg -5'
19202 3' -53.8 NC_004684.1 + 42348 0.69 0.67823
Target:  5'- --uUCUgGAGCUGCGCcACGUCGaUGCc -3'
miRNA:   3'- gacAGG-CUUGACGCGuUGCAGCgACG- -5'
19202 3' -53.8 NC_004684.1 + 31394 0.69 0.671713
Target:  5'- uCUGUCCGGcgggcaccaccccgACUGUGCGccaggccugcguggaGUCGCUGUc -3'
miRNA:   3'- -GACAGGCU--------------UGACGCGUug-------------CAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 27841 0.69 0.66736
Target:  5'- gCUGggcaCCGAgcgcGCUGUGCAcgcaggaguGCcgGUCGCUGCu -3'
miRNA:   3'- -GACa---GGCU----UGACGCGU---------UG--CAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 48022 0.69 0.656458
Target:  5'- cCUGcUCCGGgaaccGCUGCGCGaucagGCGgCGCaUGCg -3'
miRNA:   3'- -GAC-AGGCU-----UGACGCGU-----UGCaGCG-ACG- -5'
19202 3' -53.8 NC_004684.1 + 57939 0.7 0.634596
Target:  5'- uUG-CCGAccgcCUGCGguGC-UCGCUGCg -3'
miRNA:   3'- gACaGGCUu---GACGCguUGcAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 59376 0.7 0.623657
Target:  5'- gUGUCCugGAACcGCccgGCGGCacaGUCGCUGCa -3'
miRNA:   3'- gACAGG--CUUGaCG---CGUUG---CAGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 43643 0.7 0.612725
Target:  5'- -gGcCCGAACUGCGCAccgagcaguGCGcCGCcaGCg -3'
miRNA:   3'- gaCaGGCUUGACGCGU---------UGCaGCGa-CG- -5'
19202 3' -53.8 NC_004684.1 + 36283 0.71 0.590921
Target:  5'- -gGUCCuccagcgcCUGCGCGGCGUC-CUGCc -3'
miRNA:   3'- gaCAGGcuu-----GACGCGUUGCAGcGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.