miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 53637 0.69 0.367388
Target:  5'- gGAGCGCCaGGcCGUUGa-GCACCGAgGUGg -3'
miRNA:   3'- -CUCGUGG-CC-GCGAUgaCGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 15079 0.69 0.393317
Target:  5'- -cGCACC-GCGCaGCUGCGCgCGAuGUGu -3'
miRNA:   3'- cuCGUGGcCGCGaUGACGUG-GCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 28084 0.69 0.411249
Target:  5'- cGGGcCGCC-GCGCgACccGCACCGGGUGg -3'
miRNA:   3'- -CUC-GUGGcCGCGaUGa-CGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 21059 0.69 0.411249
Target:  5'- cGGGUGCCGGUGCUGaccggGCACCuGGGc- -3'
miRNA:   3'- -CUCGUGGCCGCGAUga---CGUGG-CUCac -5'
19202 5' -58.6 NC_004684.1 + 39036 0.69 0.393317
Target:  5'- cGGC-UCGGCGguguccaUugUGCGCCGGGUGg -3'
miRNA:   3'- cUCGuGGCCGCg------AugACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 51565 0.69 0.393317
Target:  5'- -uGCGCCagugcGCGCUGCgcggcgGCgACCGGGUGg -3'
miRNA:   3'- cuCGUGGc----CGCGAUGa-----CG-UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 26996 0.7 0.339455
Target:  5'- cGAGCGCggcgGGCGCgGCgaucaacagccagGCACCGGGUGc -3'
miRNA:   3'- -CUCGUGg---CCGCGaUGa------------CGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 11591 0.7 0.359011
Target:  5'- cAGCccGCCGGUGCgccuggACgacgGCACCGAGcUGg -3'
miRNA:   3'- cUCG--UGGCCGCGa-----UGa---CGUGGCUC-AC- -5'
19202 5' -58.6 NC_004684.1 + 16344 0.7 0.359011
Target:  5'- gGAGCgGCUGGCGCUggccgacaaGCUgGCGgCCGAGUa -3'
miRNA:   3'- -CUCG-UGGCCGCGA---------UGA-CGU-GGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 5943 0.7 0.350768
Target:  5'- cGAGCACCGGCgGCgagACaaUGCcGCCG-GUGu -3'
miRNA:   3'- -CUCGUGGCCG-CGa--UG--ACG-UGGCuCAC- -5'
19202 5' -58.6 NC_004684.1 + 7788 0.7 0.34266
Target:  5'- cGAGCAUUGGUGCgcgggaUGUgACCGGGUGg -3'
miRNA:   3'- -CUCGUGGCCGCGaug---ACG-UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 58768 0.7 0.326853
Target:  5'- cGAGgAUCGGCGgUGCcggUGCACCGGGc- -3'
miRNA:   3'- -CUCgUGGCCGCgAUG---ACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 1629 0.7 0.326077
Target:  5'- -uGCACCGGCGCaACcggGUACCGgcgcccaAGUGg -3'
miRNA:   3'- cuCGUGGCCGCGaUGa--CGUGGC-------UCAC- -5'
19202 5' -58.6 NC_004684.1 + 32294 0.7 0.319155
Target:  5'- uGGCGCuCGGCGCUGugcCUGaCGCCG-GUGc -3'
miRNA:   3'- cUCGUG-GCCGCGAU---GAC-GUGGCuCAC- -5'
19202 5' -58.6 NC_004684.1 + 27843 0.7 0.34266
Target:  5'- uGGGCACCGaGCGC-GCUGUGCacgcagGAGUGc -3'
miRNA:   3'- -CUCGUGGC-CGCGaUGACGUGg-----CUCAC- -5'
19202 5' -58.6 NC_004684.1 + 31072 0.7 0.319155
Target:  5'- cGGCACCGGCGagUugUuggucCACCGGGUGg -3'
miRNA:   3'- cUCGUGGCCGCg-AugAc----GUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 25192 0.71 0.29688
Target:  5'- uGGUugGCCaGGCGCUG--GCACCGGGUGg -3'
miRNA:   3'- cUCG--UGG-CCGCGAUgaCGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 25019 0.71 0.282018
Target:  5'- cAGCGCCGGUGCaGCUggaggcgGCAUCGAcGUGg -3'
miRNA:   3'- cUCGUGGCCGCGaUGA-------CGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 29615 0.71 0.29688
Target:  5'- aGGCAgCGGCGUgcaGCUGCACCGcGaUGg -3'
miRNA:   3'- cUCGUgGCCGCGa--UGACGUGGCuC-AC- -5'
19202 5' -58.6 NC_004684.1 + 35089 0.72 0.275832
Target:  5'- -uGCACCGGCGUcagGCacaGCGCCGAGc- -3'
miRNA:   3'- cuCGUGGCCGCGa--UGa--CGUGGCUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.