Results 41 - 60 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 67153 | 0.68 | 0.458212 |
Target: 5'- cAGC-UCGGUGUUACcGCGCCGGGg- -3' miRNA: 3'- cUCGuGGCCGCGAUGaCGUGGCUCac -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 20250 | 0.68 | 0.420403 |
Target: 5'- uGGGCACCGGgGCcGCcuacGCcACCGAGg- -3' miRNA: 3'- -CUCGUGGCCgCGaUGa---CG-UGGCUCac -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 41267 | 0.68 | 0.439075 |
Target: 5'- aGGUGCUGGUGCggucggACaGCGCCGAGg- -3' miRNA: 3'- cUCGUGGCCGCGa-----UGaCGUGGCUCac -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 1978 | 0.68 | 0.440021 |
Target: 5'- cAGCGCCuGGCGCgcgaaccgcguucugGCaGCGCCuGGGUGg -3' miRNA: 3'- cUCGUGG-CCGCGa--------------UGaCGUGG-CUCAC- -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 30629 | 0.68 | 0.467945 |
Target: 5'- cGGCACCgGGCGCggcccuggcgGCgucaGCGCCGGGa- -3' miRNA: 3'- cUCGUGG-CCGCGa---------UGa---CGUGGCUCac -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 4286 | 0.68 | 0.467945 |
Target: 5'- aGGGC-CUGGUGCUGC--CACaCGAGUGg -3' miRNA: 3'- -CUCGuGGCCGCGAUGacGUG-GCUCAC- -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 34572 | 0.67 | 0.487725 |
Target: 5'- -cGCGCUGGCGgUGCUGCucGCUGAc-- -3' miRNA: 3'- cuCGUGGCCGCgAUGACG--UGGCUcac -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 40962 | 0.67 | 0.487725 |
Target: 5'- cGGGcCACCGGCggcgaaccccGCUGCcagcGCGCCG-GUGg -3' miRNA: 3'- -CUC-GUGGCCG----------CGAUGa---CGUGGCuCAC- -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 47158 | 0.67 | 0.50789 |
Target: 5'- uAGUACCGGCGCgccagGC-GCACCcAGg- -3' miRNA: 3'- cUCGUGGCCGCGa----UGaCGUGGcUCac -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 13551 | 0.67 | 0.528399 |
Target: 5'- -uGCGCCuGGCggccaucgGCUACUGCGUCGAGg- -3' miRNA: 3'- cuCGUGG-CCG--------CGAUGACGUGGCUCac -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 65831 | 0.67 | 0.50789 |
Target: 5'- aGGCACCGGCgGCUcacaGgUGCACCGc--- -3' miRNA: 3'- cUCGUGGCCG-CGA----UgACGUGGCucac -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 58348 | 0.67 | 0.528399 |
Target: 5'- uGGCccuGCUGGCGUUGCcGCGCCGGuUGc -3' miRNA: 3'- cUCG---UGGCCGCGAUGaCGUGGCUcAC- -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 62396 | 0.66 | 0.59151 |
Target: 5'- cGGCACCGGgcccuugcccuCGC-GCUGCGCCcaGGUGc -3' miRNA: 3'- cUCGUGGCC-----------GCGaUGACGUGGc-UCAC- -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 47632 | 0.66 | 0.59151 |
Target: 5'- cGGGCACCGGCaggccgcgcaGgUACUGCAcgcuCCaGGUGc -3' miRNA: 3'- -CUCGUGGCCG----------CgAUGACGU----GGcUCAC- -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 44905 | 0.66 | 0.559707 |
Target: 5'- uGGCACguUGGCGUcggUGC-GCGCCGGGUa -3' miRNA: 3'- cUCGUG--GCCGCG---AUGaCGUGGCUCAc -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 4569 | 0.66 | 0.570263 |
Target: 5'- aGGC-CaucgaGGCGCUGCUGCACuCGccacccGGUGu -3' miRNA: 3'- cUCGuGg----CCGCGAUGACGUG-GC------UCAC- -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 13601 | 0.66 | 0.570263 |
Target: 5'- cAGgGCUGGcCGgaACU-CACCGAGUGg -3' miRNA: 3'- cUCgUGGCC-GCgaUGAcGUGGCUCAC- -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 23640 | 0.66 | 0.59151 |
Target: 5'- cGGCcuuGCUGGCaccGCUGCUG-ACCGGGUa -3' miRNA: 3'- cUCG---UGGCCG---CGAUGACgUGGCUCAc -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 41464 | 0.66 | 0.588313 |
Target: 5'- gGGGCugaccCCGGCGgUGCUGgCcaaggugauggacaACCGGGUGu -3' miRNA: 3'- -CUCGu----GGCCGCgAUGAC-G--------------UGGCUCAC- -5' |
|||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 57960 | 0.66 | 0.59151 |
Target: 5'- -cGCugCGGCuggugcgcacGCUGCUG-GCCGAGg- -3' miRNA: 3'- cuCGugGCCG----------CGAUGACgUGGCUCac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home