Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 23640 | 0.66 | 0.59151 |
Target: 5'- cGGCcuuGCUGGCaccGCUGCUG-ACCGGGUa -3' miRNA: 3'- cUCG---UGGCCG---CGAUGACgUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 44905 | 0.66 | 0.559707 |
Target: 5'- uGGCACguUGGCGUcggUGC-GCGCCGGGUa -3' miRNA: 3'- cUCGUG--GCCGCG---AUGaCGUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 65789 | 0.66 | 0.580866 |
Target: 5'- -cGCGCaCGGCGaccgaUGCcgUGCACCGGGc- -3' miRNA: 3'- cuCGUG-GCCGCg----AUG--ACGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 13601 | 0.66 | 0.570263 |
Target: 5'- cAGgGCUGGcCGgaACU-CACCGAGUGg -3' miRNA: 3'- cUCgUGGCC-GCgaUGAcGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 4569 | 0.66 | 0.570263 |
Target: 5'- aGGC-CaucgaGGCGCUGCUGCACuCGccacccGGUGu -3' miRNA: 3'- cUCGuGg----CCGCGAUGACGUG-GC------UCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 2526 | 0.66 | 0.559707 |
Target: 5'- cGGCACugCGGaCGCUGCgGCACCuGcGUGg -3' miRNA: 3'- cUCGUG--GCC-GCGAUGaCGUGG-CuCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 18430 | 0.66 | 0.558655 |
Target: 5'- -cGCACCGGCggccgacgugGCUcccgagcaggacgACgGCACCGAGcUGg -3' miRNA: 3'- cuCGUGGCCG----------CGA-------------UGaCGUGGCUC-AC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 61265 | 0.66 | 0.557603 |
Target: 5'- uGGCGgCGGUGUcgggauucgacaGCUGCGCCGGGUc -3' miRNA: 3'- cUCGUgGCCGCGa-----------UGACGUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 56686 | 0.66 | 0.549207 |
Target: 5'- cGGUGCUGGCGCagaaGCUGgGCCcggGGGUGa -3' miRNA: 3'- cUCGUGGCCGCGa---UGACgUGG---CUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 58229 | 0.66 | 0.548161 |
Target: 5'- -cGCACCGGCaaggucaguugccGCaccUGCcGCGCCGAGg- -3' miRNA: 3'- cuCGUGGCCG-------------CG---AUGaCGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 47632 | 0.66 | 0.59151 |
Target: 5'- cGGGCACCGGCaggccgcgcaGgUACUGCAcgcuCCaGGUGc -3' miRNA: 3'- -CUCGUGGCCG----------CgAUGACGU----GGcUCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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