Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 63147 | 0.68 | 0.445721 |
Target: 5'- cGGGCACCGGCucagACUccgaaccagguugcGCGCCGGGUc -3' miRNA: 3'- -CUCGUGGCCGcga-UGA--------------CGUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 17364 | 0.68 | 0.448587 |
Target: 5'- aGGCACCGGCcacGCUGCcGCCGAcgGUGc -3' miRNA: 3'- cUCGUGGCCGcgaUGACG-UGGCU--CAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 67153 | 0.68 | 0.458212 |
Target: 5'- cAGC-UCGGUGUUACcGCGCCGGGg- -3' miRNA: 3'- cUCGuGGCCGCGAUGaCGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 19523 | 0.68 | 0.458212 |
Target: 5'- -cGCACUGGCucaacgccaGCUGCgggUGCGCCGGGc- -3' miRNA: 3'- cuCGUGGCCG---------CGAUG---ACGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 4286 | 0.68 | 0.467945 |
Target: 5'- aGGGC-CUGGUGCUGC--CACaCGAGUGg -3' miRNA: 3'- -CUCGuGGCCGCGAUGacGUG-GCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 30629 | 0.68 | 0.467945 |
Target: 5'- cGGCACCgGGCGCggcccuggcgGCgucaGCGCCGGGa- -3' miRNA: 3'- cUCGUGG-CCGCGa---------UGa---CGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 34572 | 0.67 | 0.487725 |
Target: 5'- -cGCGCUGGCGgUGCUGCucGCUGAc-- -3' miRNA: 3'- cuCGUGGCCGCgAUGACG--UGGCUcac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 40962 | 0.67 | 0.487725 |
Target: 5'- cGGGcCACCGGCggcgaaccccGCUGCcagcGCGCCG-GUGg -3' miRNA: 3'- -CUC-GUGGCCG----------CGAUGa---CGUGGCuCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 47158 | 0.67 | 0.50789 |
Target: 5'- uAGUACCGGCGCgccagGC-GCACCcAGg- -3' miRNA: 3'- cUCGUGGCCGCGa----UGaCGUGGcUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 65831 | 0.67 | 0.50789 |
Target: 5'- aGGCACCGGCgGCUcacaGgUGCACCGc--- -3' miRNA: 3'- cUCGUGGCCG-CGA----UgACGUGGCucac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 13551 | 0.67 | 0.528399 |
Target: 5'- -uGCGCCuGGCggccaucgGCUACUGCGUCGAGg- -3' miRNA: 3'- cuCGUGG-CCG--------CGAUGACGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 58348 | 0.67 | 0.528399 |
Target: 5'- uGGCccuGCUGGCGUUGCcGCGCCGGuUGc -3' miRNA: 3'- cUCG---UGGCCGCGAUGaCGUGGCUcAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 58229 | 0.66 | 0.548161 |
Target: 5'- -cGCACCGGCaaggucaguugccGCaccUGCcGCGCCGAGg- -3' miRNA: 3'- cuCGUGGCCG-------------CG---AUGaCGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 56686 | 0.66 | 0.549207 |
Target: 5'- cGGUGCUGGCGCagaaGCUGgGCCcggGGGUGa -3' miRNA: 3'- cUCGUGGCCGCGa---UGACgUGG---CUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 54306 | 0.66 | 0.549207 |
Target: 5'- -uGCACCGcGCGaaccgggGC-GCACCGAGUc -3' miRNA: 3'- cuCGUGGC-CGCga-----UGaCGUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 61265 | 0.66 | 0.557603 |
Target: 5'- uGGCGgCGGUGUcgggauucgacaGCUGCGCCGGGUc -3' miRNA: 3'- cUCGUgGCCGCGa-----------UGACGUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 18430 | 0.66 | 0.558655 |
Target: 5'- -cGCACCGGCggccgacgugGCUcccgagcaggacgACgGCACCGAGcUGg -3' miRNA: 3'- cuCGUGGCCG----------CGA-------------UGaCGUGGCUC-AC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 44905 | 0.66 | 0.559707 |
Target: 5'- uGGCACguUGGCGUcggUGC-GCGCCGGGUa -3' miRNA: 3'- cUCGUG--GCCGCG---AUGaCGUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 2526 | 0.66 | 0.559707 |
Target: 5'- cGGCACugCGGaCGCUGCgGCACCuGcGUGg -3' miRNA: 3'- cUCGUG--GCC-GCGAUGaCGUGG-CuCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 45279 | 0.66 | 0.559707 |
Target: 5'- uGAGCuGCCaGGCGCUGCUGguUCGcGcUGu -3' miRNA: 3'- -CUCG-UGG-CCGCGAUGACguGGCuC-AC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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