Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 5775 | 0.72 | 0.243428 |
Target: 5'- gGGGCGCaGcGCGCUACUGCGCCaGGcGUGc -3' miRNA: 3'- -CUCGUGgC-CGCGAUGACGUGG-CU-CAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 46836 | 0.72 | 0.243428 |
Target: 5'- cGGCaACCGGCGCUcaGCUGCGgCGuAGUa -3' miRNA: 3'- cUCG-UGGCCGCGA--UGACGUgGC-UCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 11960 | 0.73 | 0.219838 |
Target: 5'- aGAcCACCGGCGC-AC-GCGCUGGGUGg -3' miRNA: 3'- -CUcGUGGCCGCGaUGaCGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 40475 | 0.74 | 0.20345 |
Target: 5'- gGGGUcUCGGCGgU-CUGCGCCGAGUGc -3' miRNA: 3'- -CUCGuGGCCGCgAuGACGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 28089 | 0.74 | 0.198227 |
Target: 5'- gGGGCGCUcguuaGGCGa-GCUGCACCGAGUc -3' miRNA: 3'- -CUCGUGG-----CCGCgaUGACGUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 42383 | 0.75 | 0.16052 |
Target: 5'- -uGCACCGGCGCUGagcGCgACCGGGUu -3' miRNA: 3'- cuCGUGGCCGCGAUga-CG-UGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 7417 | 0.75 | 0.156289 |
Target: 5'- cGGCGCUGGCGCUACcagGCACUGAc-- -3' miRNA: 3'- cUCGUGGCCGCGAUGa--CGUGGCUcac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 626 | 0.76 | 0.146939 |
Target: 5'- cGAGUACC-GCGCcgaggucgccggggUGCUGUACCGGGUGg -3' miRNA: 3'- -CUCGUGGcCGCG--------------AUGACGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 10811 | 0.77 | 0.112884 |
Target: 5'- cGGCAuCCGGCgGCUggGCcGCACCGAGUGa -3' miRNA: 3'- cUCGU-GGCCG-CGA--UGaCGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 2946 | 0.84 | 0.034595 |
Target: 5'- cGAGCACCGaggccaucggcGCGCUGCUGUugCGGGUGg -3' miRNA: 3'- -CUCGUGGC-----------CGCGAUGACGugGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 35514 | 1.07 | 0.000795 |
Target: 5'- gGAGCACCGGCGCUACUGCACCGAGUGc -3' miRNA: 3'- -CUCGUGGCCGCGAUGACGUGGCUCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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