miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 32294 0.7 0.319155
Target:  5'- uGGCGCuCGGCGCUGugcCUGaCGCCG-GUGc -3'
miRNA:   3'- cUCGUG-GCCGCGAU---GAC-GUGGCuCAC- -5'
19202 5' -58.6 NC_004684.1 + 34572 0.67 0.487725
Target:  5'- -cGCGCUGGCGgUGCUGCucGCUGAc-- -3'
miRNA:   3'- cuCGUGGCCGCgAUGACG--UGGCUcac -5'
19202 5' -58.6 NC_004684.1 + 35089 0.72 0.275832
Target:  5'- -uGCACCGGCGUcagGCacaGCGCCGAGc- -3'
miRNA:   3'- cuCGUGGCCGCGa--UGa--CGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 35514 1.07 0.000795
Target:  5'- gGAGCACCGGCGCUACUGCACCGAGUGc -3'
miRNA:   3'- -CUCGUGGCCGCGAUGACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 39036 0.69 0.393317
Target:  5'- cGGC-UCGGCGguguccaUugUGCGCCGGGUGg -3'
miRNA:   3'- cUCGuGGCCGCg------AugACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 40475 0.74 0.20345
Target:  5'- gGGGUcUCGGCGgU-CUGCGCCGAGUGc -3'
miRNA:   3'- -CUCGuGGCCGCgAuGACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 40962 0.67 0.487725
Target:  5'- cGGGcCACCGGCggcgaaccccGCUGCcagcGCGCCG-GUGg -3'
miRNA:   3'- -CUC-GUGGCCG----------CGAUGa---CGUGGCuCAC- -5'
19202 5' -58.6 NC_004684.1 + 41267 0.68 0.439075
Target:  5'- aGGUGCUGGUGCggucggACaGCGCCGAGg- -3'
miRNA:   3'- cUCGUGGCCGCGa-----UGaCGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 41464 0.66 0.588313
Target:  5'- gGGGCugaccCCGGCGgUGCUGgCcaaggugauggacaACCGGGUGu -3'
miRNA:   3'- -CUCGu----GGCCGCgAUGAC-G--------------UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 42383 0.75 0.16052
Target:  5'- -uGCACCGGCGCUGagcGCgACCGGGUu -3'
miRNA:   3'- cuCGUGGCCGCGAUga-CG-UGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 44905 0.66 0.559707
Target:  5'- uGGCACguUGGCGUcggUGC-GCGCCGGGUa -3'
miRNA:   3'- cUCGUG--GCCGCG---AUGaCGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 45279 0.66 0.559707
Target:  5'- uGAGCuGCCaGGCGCUGCUGguUCGcGcUGu -3'
miRNA:   3'- -CUCG-UGG-CCGCGAUGACguGGCuC-AC- -5'
19202 5' -58.6 NC_004684.1 + 46836 0.72 0.243428
Target:  5'- cGGCaACCGGCGCUcaGCUGCGgCGuAGUa -3'
miRNA:   3'- cUCG-UGGCCGCGA--UGACGUgGC-UCAc -5'
19202 5' -58.6 NC_004684.1 + 47158 0.67 0.50789
Target:  5'- uAGUACCGGCGCgccagGC-GCACCcAGg- -3'
miRNA:   3'- cUCGUGGCCGCGa----UGaCGUGGcUCac -5'
19202 5' -58.6 NC_004684.1 + 47632 0.66 0.59151
Target:  5'- cGGGCACCGGCaggccgcgcaGgUACUGCAcgcuCCaGGUGc -3'
miRNA:   3'- -CUCGUGGCCG----------CgAUGACGU----GGcUCAC- -5'
19202 5' -58.6 NC_004684.1 + 51565 0.69 0.393317
Target:  5'- -uGCGCCagugcGCGCUGCgcggcgGCgACCGGGUGg -3'
miRNA:   3'- cuCGUGGc----CGCGAUGa-----CG-UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 53637 0.69 0.367388
Target:  5'- gGAGCGCCaGGcCGUUGa-GCACCGAgGUGg -3'
miRNA:   3'- -CUCGUGG-CC-GCGAUgaCGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 54306 0.66 0.549207
Target:  5'- -uGCACCGcGCGaaccgggGC-GCACCGAGUc -3'
miRNA:   3'- cuCGUGGC-CGCga-----UGaCGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 56686 0.66 0.549207
Target:  5'- cGGUGCUGGCGCagaaGCUGgGCCcggGGGUGa -3'
miRNA:   3'- cUCGUGGCCGCGa---UGACgUGG---CUCAC- -5'
19202 5' -58.6 NC_004684.1 + 57131 0.68 0.419482
Target:  5'- cAGCACUGGCGCgGCUGguUCGccuccauggcggcGGUGg -3'
miRNA:   3'- cUCGUGGCCGCGaUGACguGGC-------------UCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.