miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 57960 0.66 0.59151
Target:  5'- -cGCugCGGCuggugcgcacGCUGCUG-GCCGAGg- -3'
miRNA:   3'- cuCGugGCCG----------CGAUGACgUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 58229 0.66 0.548161
Target:  5'- -cGCACCGGCaaggucaguugccGCaccUGCcGCGCCGAGg- -3'
miRNA:   3'- cuCGUGGCCG-------------CG---AUGaCGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 58348 0.67 0.528399
Target:  5'- uGGCccuGCUGGCGUUGCcGCGCCGGuUGc -3'
miRNA:   3'- cUCG---UGGCCGCGAUGaCGUGGCUcAC- -5'
19202 5' -58.6 NC_004684.1 + 58768 0.7 0.326853
Target:  5'- cGAGgAUCGGCGgUGCcggUGCACCGGGc- -3'
miRNA:   3'- -CUCgUGGCCGCgAUG---ACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 61265 0.66 0.557603
Target:  5'- uGGCGgCGGUGUcgggauucgacaGCUGCGCCGGGUc -3'
miRNA:   3'- cUCGUgGCCGCGa-----------UGACGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 61537 0.68 0.439075
Target:  5'- aGGCGCUGGCGUgccGCUGguugguCCGGGUGc -3'
miRNA:   3'- cUCGUGGCCGCGa--UGACgu----GGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 62396 0.66 0.59151
Target:  5'- cGGCACCGGgcccuugcccuCGC-GCUGCGCCcaGGUGc -3'
miRNA:   3'- cUCGUGGCC-----------GCGaUGACGUGGc-UCAC- -5'
19202 5' -58.6 NC_004684.1 + 63147 0.68 0.445721
Target:  5'- cGGGCACCGGCucagACUccgaaccagguugcGCGCCGGGUc -3'
miRNA:   3'- -CUCGUGGCCGcga-UGA--------------CGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 65789 0.66 0.580866
Target:  5'- -cGCGCaCGGCGaccgaUGCcgUGCACCGGGc- -3'
miRNA:   3'- cuCGUG-GCCGCg----AUG--ACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 65831 0.67 0.50789
Target:  5'- aGGCACCGGCgGCUcacaGgUGCACCGc--- -3'
miRNA:   3'- cUCGUGGCCG-CGA----UgACGUGGCucac -5'
19202 5' -58.6 NC_004684.1 + 67153 0.68 0.458212
Target:  5'- cAGC-UCGGUGUUACcGCGCCGGGg- -3'
miRNA:   3'- cUCGuGGCCGCGAUGaCGUGGCUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.