Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 44905 | 0.66 | 0.559707 |
Target: 5'- uGGCACguUGGCGUcggUGC-GCGCCGGGUa -3' miRNA: 3'- cUCGUG--GCCGCG---AUGaCGUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 42383 | 0.75 | 0.16052 |
Target: 5'- -uGCACCGGCGCUGagcGCgACCGGGUu -3' miRNA: 3'- cuCGUGGCCGCGAUga-CG-UGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 41464 | 0.66 | 0.588313 |
Target: 5'- gGGGCugaccCCGGCGgUGCUGgCcaaggugauggacaACCGGGUGu -3' miRNA: 3'- -CUCGu----GGCCGCgAUGAC-G--------------UGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 41267 | 0.68 | 0.439075 |
Target: 5'- aGGUGCUGGUGCggucggACaGCGCCGAGg- -3' miRNA: 3'- cUCGUGGCCGCGa-----UGaCGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 40962 | 0.67 | 0.487725 |
Target: 5'- cGGGcCACCGGCggcgaaccccGCUGCcagcGCGCCG-GUGg -3' miRNA: 3'- -CUC-GUGGCCG----------CGAUGa---CGUGGCuCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 40475 | 0.74 | 0.20345 |
Target: 5'- gGGGUcUCGGCGgU-CUGCGCCGAGUGc -3' miRNA: 3'- -CUCGuGGCCGCgAuGACGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 39036 | 0.69 | 0.393317 |
Target: 5'- cGGC-UCGGCGguguccaUugUGCGCCGGGUGg -3' miRNA: 3'- cUCGuGGCCGCg------AugACGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 35514 | 1.07 | 0.000795 |
Target: 5'- gGAGCACCGGCGCUACUGCACCGAGUGc -3' miRNA: 3'- -CUCGUGGCCGCGAUGACGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 35089 | 0.72 | 0.275832 |
Target: 5'- -uGCACCGGCGUcagGCacaGCGCCGAGc- -3' miRNA: 3'- cuCGUGGCCGCGa--UGa--CGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 34572 | 0.67 | 0.487725 |
Target: 5'- -cGCGCUGGCGgUGCUGCucGCUGAc-- -3' miRNA: 3'- cuCGUGGCCGCgAUGACG--UGGCUcac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 32294 | 0.7 | 0.319155 |
Target: 5'- uGGCGCuCGGCGCUGugcCUGaCGCCG-GUGc -3' miRNA: 3'- cUCGUG-GCCGCGAU---GAC-GUGGCuCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 31072 | 0.7 | 0.319155 |
Target: 5'- cGGCACCGGCGagUugUuggucCACCGGGUGg -3' miRNA: 3'- cUCGUGGCCGCg-AugAc----GUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 30629 | 0.68 | 0.467945 |
Target: 5'- cGGCACCgGGCGCggcccuggcgGCgucaGCGCCGGGa- -3' miRNA: 3'- cUCGUGG-CCGCGa---------UGa---CGUGGCUCac -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 29615 | 0.71 | 0.29688 |
Target: 5'- aGGCAgCGGCGUgcaGCUGCACCGcGaUGg -3' miRNA: 3'- cUCGUgGCCGCGa--UGACGUGGCuC-AC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 28719 | 0.68 | 0.439075 |
Target: 5'- aGGCuuuCUGGCGCgucUGCgGCACCGAcGUGc -3' miRNA: 3'- cUCGu--GGCCGCG---AUGaCGUGGCU-CAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 28089 | 0.74 | 0.198227 |
Target: 5'- gGGGCGCUcguuaGGCGa-GCUGCACCGAGUc -3' miRNA: 3'- -CUCGUGG-----CCGCgaUGACGUGGCUCAc -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 28084 | 0.69 | 0.411249 |
Target: 5'- cGGGcCGCC-GCGCgACccGCACCGGGUGg -3' miRNA: 3'- -CUC-GUGGcCGCGaUGa-CGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 27843 | 0.7 | 0.34266 |
Target: 5'- uGGGCACCGaGCGC-GCUGUGCacgcagGAGUGc -3' miRNA: 3'- -CUCGUGGC-CGCGaUGACGUGg-----CUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 26996 | 0.7 | 0.339455 |
Target: 5'- cGAGCGCggcgGGCGCgGCgaucaacagccagGCACCGGGUGc -3' miRNA: 3'- -CUCGUGg---CCGCGaUGa------------CGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 25192 | 0.71 | 0.29688 |
Target: 5'- uGGUugGCCaGGCGCUG--GCACCGGGUGg -3' miRNA: 3'- cUCG--UGG-CCGCGAUgaCGUGGCUCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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