miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 25019 0.71 0.282018
Target:  5'- cAGCGCCGGUGCaGCUggaggcgGCAUCGAcGUGg -3'
miRNA:   3'- cUCGUGGCCGCGaUGA-------CGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 24768 0.69 0.393317
Target:  5'- cAGCACCGGCgGCgGCgggggagGUGCCGGGUc -3'
miRNA:   3'- cUCGUGGCCG-CGaUGa------CGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 23640 0.66 0.59151
Target:  5'- cGGCcuuGCUGGCaccGCUGCUG-ACCGGGUa -3'
miRNA:   3'- cUCG---UGGCCG---CGAUGACgUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 23212 0.66 0.580866
Target:  5'- aGGUGCUGGCGC----GCGCCGGGUu -3'
miRNA:   3'- cUCGUGGCCGCGaugaCGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 21059 0.69 0.411249
Target:  5'- cGGGUGCCGGUGCUGaccggGCACCuGGGc- -3'
miRNA:   3'- -CUCGUGGCCGCGAUga---CGUGG-CUCac -5'
19202 5' -58.6 NC_004684.1 + 20250 0.68 0.420403
Target:  5'- uGGGCACCGGgGCcGCcuacGCcACCGAGg- -3'
miRNA:   3'- -CUCGUGGCCgCGaUGa---CG-UGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 19523 0.68 0.458212
Target:  5'- -cGCACUGGCucaacgccaGCUGCgggUGCGCCGGGc- -3'
miRNA:   3'- cuCGUGGCCG---------CGAUG---ACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 18430 0.66 0.558655
Target:  5'- -cGCACCGGCggccgacgugGCUcccgagcaggacgACgGCACCGAGcUGg -3'
miRNA:   3'- cuCGUGGCCG----------CGA-------------UGaCGUGGCUC-AC- -5'
19202 5' -58.6 NC_004684.1 + 17364 0.68 0.448587
Target:  5'- aGGCACCGGCcacGCUGCcGCCGAcgGUGc -3'
miRNA:   3'- cUCGUGGCCGcgaUGACG-UGGCU--CAC- -5'
19202 5' -58.6 NC_004684.1 + 16344 0.7 0.359011
Target:  5'- gGAGCgGCUGGCGCUggccgacaaGCUgGCGgCCGAGUa -3'
miRNA:   3'- -CUCG-UGGCCGCGA---------UGA-CGU-GGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 15445 0.69 0.402219
Target:  5'- uGGaGCCGGUGCUGCgacguaagUGCGUCGAGUGg -3'
miRNA:   3'- cUCgUGGCCGCGAUG--------ACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 15079 0.69 0.393317
Target:  5'- -cGCACC-GCGCaGCUGCGCgCGAuGUGu -3'
miRNA:   3'- cuCGUGGcCGCGaUGACGUG-GCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 13601 0.66 0.570263
Target:  5'- cAGgGCUGGcCGgaACU-CACCGAGUGg -3'
miRNA:   3'- cUCgUGGCC-GCgaUGAcGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 13551 0.67 0.528399
Target:  5'- -uGCGCCuGGCggccaucgGCUACUGCGUCGAGg- -3'
miRNA:   3'- cuCGUGG-CCG--------CGAUGACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 11960 0.73 0.219838
Target:  5'- aGAcCACCGGCGC-AC-GCGCUGGGUGg -3'
miRNA:   3'- -CUcGUGGCCGCGaUGaCGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 11591 0.7 0.359011
Target:  5'- cAGCccGCCGGUGCgccuggACgacgGCACCGAGcUGg -3'
miRNA:   3'- cUCG--UGGCCGCGa-----UGa---CGUGGCUC-AC- -5'
19202 5' -58.6 NC_004684.1 + 10811 0.77 0.112884
Target:  5'- cGGCAuCCGGCgGCUggGCcGCACCGAGUGa -3'
miRNA:   3'- cUCGU-GGCCG-CGA--UGaCGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 8281 0.66 0.580866
Target:  5'- cGAcCugCGGCGCUACcacgGCAUCGAa-- -3'
miRNA:   3'- -CUcGugGCCGCGAUGa---CGUGGCUcac -5'
19202 5' -58.6 NC_004684.1 + 7788 0.7 0.34266
Target:  5'- cGAGCAUUGGUGCgcgggaUGUgACCGGGUGg -3'
miRNA:   3'- -CUCGUGGCCGCGaug---ACG-UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 7417 0.75 0.156289
Target:  5'- cGGCGCUGGCGCUACcagGCACUGAc-- -3'
miRNA:   3'- cUCGUGGCCGCGAUGa--CGUGGCUcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.