Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19202 | 5' | -58.6 | NC_004684.1 | + | 6773 | 0.69 | 0.411249 |
Target: 5'- -cGCAUgGGCGacg-UGCGCCGGGUGa -3' miRNA: 3'- cuCGUGgCCGCgaugACGUGGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 5943 | 0.7 | 0.350768 |
Target: 5'- cGAGCACCGGCgGCgagACaaUGCcGCCG-GUGu -3' miRNA: 3'- -CUCGUGGCCG-CGa--UG--ACG-UGGCuCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 5775 | 0.72 | 0.243428 |
Target: 5'- gGGGCGCaGcGCGCUACUGCGCCaGGcGUGc -3' miRNA: 3'- -CUCGUGgC-CGCGAUGACGUGG-CU-CAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 5317 | 0.66 | 0.59151 |
Target: 5'- -cGCGCUGGCGaccgUGCaGCAgUGGGUGg -3' miRNA: 3'- cuCGUGGCCGCg---AUGaCGUgGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 4569 | 0.66 | 0.570263 |
Target: 5'- aGGC-CaucgaGGCGCUGCUGCACuCGccacccGGUGu -3' miRNA: 3'- cUCGuGg----CCGCGAUGACGUG-GC------UCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 4286 | 0.68 | 0.467945 |
Target: 5'- aGGGC-CUGGUGCUGC--CACaCGAGUGg -3' miRNA: 3'- -CUCGuGGCCGCGAUGacGUG-GCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 2946 | 0.84 | 0.034595 |
Target: 5'- cGAGCACCGaggccaucggcGCGCUGCUGUugCGGGUGg -3' miRNA: 3'- -CUCGUGGC-----------CGCGAUGACGugGCUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 2526 | 0.66 | 0.559707 |
Target: 5'- cGGCACugCGGaCGCUGCgGCACCuGcGUGg -3' miRNA: 3'- cUCGUG--GCC-GCGAUGaCGUGG-CuCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 1978 | 0.68 | 0.440021 |
Target: 5'- cAGCGCCuGGCGCgcgaaccgcguucugGCaGCGCCuGGGUGg -3' miRNA: 3'- cUCGUGG-CCGCGa--------------UGaCGUGG-CUCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 1629 | 0.7 | 0.326077 |
Target: 5'- -uGCACCGGCGCaACcggGUACCGgcgcccaAGUGg -3' miRNA: 3'- cuCGUGGCCGCGaUGa--CGUGGC-------UCAC- -5' |
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19202 | 5' | -58.6 | NC_004684.1 | + | 626 | 0.76 | 0.146939 |
Target: 5'- cGAGUACC-GCGCcgaggucgccggggUGCUGUACCGGGUGg -3' miRNA: 3'- -CUCGUGGcCGCG--------------AUGACGUGGCUCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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