miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 47632 0.66 0.59151
Target:  5'- cGGGCACCGGCaggccgcgcaGgUACUGCAcgcuCCaGGUGc -3'
miRNA:   3'- -CUCGUGGCCG----------CgAUGACGU----GGcUCAC- -5'
19202 5' -58.6 NC_004684.1 + 17364 0.68 0.448587
Target:  5'- aGGCACCGGCcacGCUGCcGCCGAcgGUGc -3'
miRNA:   3'- cUCGUGGCCGcgaUGACG-UGGCU--CAC- -5'
19202 5' -58.6 NC_004684.1 + 45279 0.66 0.559707
Target:  5'- uGAGCuGCCaGGCGCUGCUGguUCGcGcUGu -3'
miRNA:   3'- -CUCG-UGG-CCGCGAUGACguGGCuC-AC- -5'
19202 5' -58.6 NC_004684.1 + 28089 0.74 0.198227
Target:  5'- gGGGCGCUcguuaGGCGa-GCUGCACCGAGUc -3'
miRNA:   3'- -CUCGUGG-----CCGCgaUGACGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 5317 0.66 0.59151
Target:  5'- -cGCGCUGGCGaccgUGCaGCAgUGGGUGg -3'
miRNA:   3'- cuCGUGGCCGCg---AUGaCGUgGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 42383 0.75 0.16052
Target:  5'- -uGCACCGGCGCUGagcGCgACCGGGUu -3'
miRNA:   3'- cuCGUGGCCGCGAUga-CG-UGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 626 0.76 0.146939
Target:  5'- cGAGUACC-GCGCcgaggucgccggggUGCUGUACCGGGUGg -3'
miRNA:   3'- -CUCGUGGcCGCG--------------AUGACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 67153 0.68 0.458212
Target:  5'- cAGC-UCGGUGUUACcGCGCCGGGg- -3'
miRNA:   3'- cUCGuGGCCGCGAUGaCGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 46836 0.72 0.243428
Target:  5'- cGGCaACCGGCGCUcaGCUGCGgCGuAGUa -3'
miRNA:   3'- cUCG-UGGCCGCGA--UGACGUgGC-UCAc -5'
19202 5' -58.6 NC_004684.1 + 13551 0.67 0.528399
Target:  5'- -uGCGCCuGGCggccaucgGCUACUGCGUCGAGg- -3'
miRNA:   3'- cuCGUGG-CCG--------CGAUGACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 58348 0.67 0.528399
Target:  5'- uGGCccuGCUGGCGUUGCcGCGCCGGuUGc -3'
miRNA:   3'- cUCG---UGGCCGCGAUGaCGUGGCUcAC- -5'
19202 5' -58.6 NC_004684.1 + 16344 0.7 0.359011
Target:  5'- gGAGCgGCUGGCGCUggccgacaaGCUgGCGgCCGAGUa -3'
miRNA:   3'- -CUCG-UGGCCGCGA---------UGA-CGU-GGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 27843 0.7 0.34266
Target:  5'- uGGGCACCGaGCGC-GCUGUGCacgcagGAGUGc -3'
miRNA:   3'- -CUCGUGGC-CGCGaUGACGUGg-----CUCAC- -5'
19202 5' -58.6 NC_004684.1 + 26996 0.7 0.339455
Target:  5'- cGAGCGCggcgGGCGCgGCgaucaacagccagGCACCGGGUGc -3'
miRNA:   3'- -CUCGUGg---CCGCGaUGa------------CGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 1629 0.7 0.326077
Target:  5'- -uGCACCGGCGCaACcggGUACCGgcgcccaAGUGg -3'
miRNA:   3'- cuCGUGGCCGCGaUGa--CGUGGC-------UCAC- -5'
19202 5' -58.6 NC_004684.1 + 63147 0.68 0.445721
Target:  5'- cGGGCACCGGCucagACUccgaaccagguugcGCGCCGGGUc -3'
miRNA:   3'- -CUCGUGGCCGcga-UGA--------------CGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 19523 0.68 0.458212
Target:  5'- -cGCACUGGCucaacgccaGCUGCgggUGCGCCGGGc- -3'
miRNA:   3'- cuCGUGGCCG---------CGAUG---ACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 4286 0.68 0.467945
Target:  5'- aGGGC-CUGGUGCUGC--CACaCGAGUGg -3'
miRNA:   3'- -CUCGuGGCCGCGAUGacGUG-GCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 34572 0.67 0.487725
Target:  5'- -cGCGCUGGCGgUGCUGCucGCUGAc-- -3'
miRNA:   3'- cuCGUGGCCGCgAUGACG--UGGCUcac -5'
19202 5' -58.6 NC_004684.1 + 65831 0.67 0.50789
Target:  5'- aGGCACCGGCgGCUcacaGgUGCACCGc--- -3'
miRNA:   3'- cUCGUGGCCG-CGA----UgACGUGGCucac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.