miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 13551 0.67 0.528399
Target:  5'- -uGCGCCuGGCggccaucgGCUACUGCGUCGAGg- -3'
miRNA:   3'- cuCGUGG-CCG--------CGAUGACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 58348 0.67 0.528399
Target:  5'- uGGCccuGCUGGCGUUGCcGCGCCGGuUGc -3'
miRNA:   3'- cUCG---UGGCCGCGAUGaCGUGGCUcAC- -5'
19202 5' -58.6 NC_004684.1 + 34572 0.67 0.487725
Target:  5'- -cGCGCUGGCGgUGCUGCucGCUGAc-- -3'
miRNA:   3'- cuCGUGGCCGCgAUGACG--UGGCUcac -5'
19202 5' -58.6 NC_004684.1 + 4286 0.68 0.467945
Target:  5'- aGGGC-CUGGUGCUGC--CACaCGAGUGg -3'
miRNA:   3'- -CUCGuGGCCGCGAUGacGUG-GCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 19523 0.68 0.458212
Target:  5'- -cGCACUGGCucaacgccaGCUGCgggUGCGCCGGGc- -3'
miRNA:   3'- cuCGUGGCCG---------CGAUG---ACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 63147 0.68 0.445721
Target:  5'- cGGGCACCGGCucagACUccgaaccagguugcGCGCCGGGUc -3'
miRNA:   3'- -CUCGUGGCCGcga-UGA--------------CGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 61537 0.68 0.439075
Target:  5'- aGGCGCUGGCGUgccGCUGguugguCCGGGUGc -3'
miRNA:   3'- cUCGUGGCCGCGa--UGACgu----GGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 28719 0.68 0.439075
Target:  5'- aGGCuuuCUGGCGCgucUGCgGCACCGAcGUGc -3'
miRNA:   3'- cUCGu--GGCCGCG---AUGaCGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 57131 0.68 0.419482
Target:  5'- cAGCACUGGCGCgGCUGguUCGccuccauggcggcGGUGg -3'
miRNA:   3'- cUCGUGGCCGCGaUGACguGGC-------------UCAC- -5'
19202 5' -58.6 NC_004684.1 + 28084 0.69 0.411249
Target:  5'- cGGGcCGCC-GCGCgACccGCACCGGGUGg -3'
miRNA:   3'- -CUC-GUGGcCGCGaUGa-CGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 35514 1.07 0.000795
Target:  5'- gGAGCACCGGCGCUACUGCACCGAGUGc -3'
miRNA:   3'- -CUCGUGGCCGCGAUGACGUGGCUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.