miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 58348 0.67 0.528399
Target:  5'- uGGCccuGCUGGCGUUGCcGCGCCGGuUGc -3'
miRNA:   3'- cUCG---UGGCCGCGAUGaCGUGGCUcAC- -5'
19202 5' -58.6 NC_004684.1 + 47158 0.67 0.50789
Target:  5'- uAGUACCGGCGCgccagGC-GCACCcAGg- -3'
miRNA:   3'- cUCGUGGCCGCGa----UGaCGUGGcUCac -5'
19202 5' -58.6 NC_004684.1 + 65831 0.67 0.50789
Target:  5'- aGGCACCGGCgGCUcacaGgUGCACCGc--- -3'
miRNA:   3'- cUCGUGGCCG-CGA----UgACGUGGCucac -5'
19202 5' -58.6 NC_004684.1 + 40962 0.67 0.487725
Target:  5'- cGGGcCACCGGCggcgaaccccGCUGCcagcGCGCCG-GUGg -3'
miRNA:   3'- -CUC-GUGGCCG----------CGAUGa---CGUGGCuCAC- -5'
19202 5' -58.6 NC_004684.1 + 34572 0.67 0.487725
Target:  5'- -cGCGCUGGCGgUGCUGCucGCUGAc-- -3'
miRNA:   3'- cuCGUGGCCGCgAUGACG--UGGCUcac -5'
19202 5' -58.6 NC_004684.1 + 30629 0.68 0.467945
Target:  5'- cGGCACCgGGCGCggcccuggcgGCgucaGCGCCGGGa- -3'
miRNA:   3'- cUCGUGG-CCGCGa---------UGa---CGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 4286 0.68 0.467945
Target:  5'- aGGGC-CUGGUGCUGC--CACaCGAGUGg -3'
miRNA:   3'- -CUCGuGGCCGCGAUGacGUG-GCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 19523 0.68 0.458212
Target:  5'- -cGCACUGGCucaacgccaGCUGCgggUGCGCCGGGc- -3'
miRNA:   3'- cuCGUGGCCG---------CGAUG---ACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 67153 0.68 0.458212
Target:  5'- cAGC-UCGGUGUUACcGCGCCGGGg- -3'
miRNA:   3'- cUCGuGGCCGCGAUGaCGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 17364 0.68 0.448587
Target:  5'- aGGCACCGGCcacGCUGCcGCCGAcgGUGc -3'
miRNA:   3'- cUCGUGGCCGcgaUGACG-UGGCU--CAC- -5'
19202 5' -58.6 NC_004684.1 + 63147 0.68 0.445721
Target:  5'- cGGGCACCGGCucagACUccgaaccagguugcGCGCCGGGUc -3'
miRNA:   3'- -CUCGUGGCCGcga-UGA--------------CGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 1978 0.68 0.440021
Target:  5'- cAGCGCCuGGCGCgcgaaccgcguucugGCaGCGCCuGGGUGg -3'
miRNA:   3'- cUCGUGG-CCGCGa--------------UGaCGUGG-CUCAC- -5'
19202 5' -58.6 NC_004684.1 + 28719 0.68 0.439075
Target:  5'- aGGCuuuCUGGCGCgucUGCgGCACCGAcGUGc -3'
miRNA:   3'- cUCGu--GGCCGCG---AUGaCGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 61537 0.68 0.439075
Target:  5'- aGGCGCUGGCGUgccGCUGguugguCCGGGUGc -3'
miRNA:   3'- cUCGUGGCCGCGa--UGACgu----GGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 41267 0.68 0.439075
Target:  5'- aGGUGCUGGUGCggucggACaGCGCCGAGg- -3'
miRNA:   3'- cUCGUGGCCGCGa-----UGaCGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 20250 0.68 0.420403
Target:  5'- uGGGCACCGGgGCcGCcuacGCcACCGAGg- -3'
miRNA:   3'- -CUCGUGGCCgCGaUGa---CG-UGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 57131 0.68 0.419482
Target:  5'- cAGCACUGGCGCgGCUGguUCGccuccauggcggcGGUGg -3'
miRNA:   3'- cUCGUGGCCGCGaUGACguGGC-------------UCAC- -5'
19202 5' -58.6 NC_004684.1 + 21059 0.69 0.411249
Target:  5'- cGGGUGCCGGUGCUGaccggGCACCuGGGc- -3'
miRNA:   3'- -CUCGUGGCCGCGAUga---CGUGG-CUCac -5'
19202 5' -58.6 NC_004684.1 + 28084 0.69 0.411249
Target:  5'- cGGGcCGCC-GCGCgACccGCACCGGGUGg -3'
miRNA:   3'- -CUC-GUGGcCGCGaUGa-CGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 6773 0.69 0.411249
Target:  5'- -cGCAUgGGCGacg-UGCGCCGGGUGa -3'
miRNA:   3'- cuCGUGgCCGCgaugACGUGGCUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.