miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19203 3' -56.9 NC_004684.1 + 12204 0.66 0.669837
Target:  5'- --aGCGcCGCCGCCAGCggUG-CGUu -3'
miRNA:   3'- aagUGCuGCGGCGGUCGaaGCuGCAu -5'
19203 3' -56.9 NC_004684.1 + 67008 0.66 0.658995
Target:  5'- -aCGCGGgGCCGUCGGUcUCGGCc-- -3'
miRNA:   3'- aaGUGCUgCGGCGGUCGaAGCUGcau -5'
19203 3' -56.9 NC_004684.1 + 14398 0.66 0.648129
Target:  5'- --gACGACGguuacuCgGCCAGCgacUUCGACGUGa -3'
miRNA:   3'- aagUGCUGC------GgCGGUCG---AAGCUGCAU- -5'
19203 3' -56.9 NC_004684.1 + 36399 0.66 0.641602
Target:  5'- cUCGCGggccuaccuccucgaGCGCCa-CGGCUUCGugGUGg -3'
miRNA:   3'- aAGUGC---------------UGCGGcgGUCGAAGCugCAU- -5'
19203 3' -56.9 NC_004684.1 + 53429 0.66 0.637249
Target:  5'- -cCGCG-CGaCUGCCAGUcagCGACGUAc -3'
miRNA:   3'- aaGUGCuGC-GGCGGUCGaa-GCUGCAU- -5'
19203 3' -56.9 NC_004684.1 + 30403 0.66 0.626364
Target:  5'- aUCcCGGCGCUGCCguGGCaacaccugUUCGACGg- -3'
miRNA:   3'- aAGuGCUGCGGCGG--UCG--------AAGCUGCau -5'
19203 3' -56.9 NC_004684.1 + 55954 0.66 0.626364
Target:  5'- -aCGcCGACGCCGCgcucCAGCgggucaUCGGCGUc -3'
miRNA:   3'- aaGU-GCUGCGGCG----GUCGa-----AGCUGCAu -5'
19203 3' -56.9 NC_004684.1 + 11365 0.66 0.626364
Target:  5'- -cCACgGugGUgGCCAGCagCGugGUGg -3'
miRNA:   3'- aaGUG-CugCGgCGGUCGaaGCugCAU- -5'
19203 3' -56.9 NC_004684.1 + 50195 0.66 0.615484
Target:  5'- -gCACGACGuuGCCG---UCGGCGUc -3'
miRNA:   3'- aaGUGCUGCggCGGUcgaAGCUGCAu -5'
19203 3' -56.9 NC_004684.1 + 52236 0.67 0.604618
Target:  5'- gUgGCGGCgGCgGCCAGCUgcgcgcUGGCGUGg -3'
miRNA:   3'- aAgUGCUG-CGgCGGUCGAa-----GCUGCAU- -5'
19203 3' -56.9 NC_004684.1 + 22729 0.67 0.604618
Target:  5'- aUCGCGcCGCCGCagCAGCgggUGACGc- -3'
miRNA:   3'- aAGUGCuGCGGCG--GUCGaa-GCUGCau -5'
19203 3' -56.9 NC_004684.1 + 18950 0.67 0.604618
Target:  5'- --aGCGGCGCaggauGCCAGCgcggugUCGAUGUc -3'
miRNA:   3'- aagUGCUGCGg----CGGUCGa-----AGCUGCAu -5'
19203 3' -56.9 NC_004684.1 + 21501 0.67 0.593776
Target:  5'- aUCGUGuuCGCCGCCAGCgUgGACGg- -3'
miRNA:   3'- aAGUGCu-GCGGCGGUCGaAgCUGCau -5'
19203 3' -56.9 NC_004684.1 + 6812 0.67 0.582965
Target:  5'- -cUACGACGCCGUCGGCcUgGAgGa- -3'
miRNA:   3'- aaGUGCUGCGGCGGUCGaAgCUgCau -5'
19203 3' -56.9 NC_004684.1 + 25011 0.67 0.582965
Target:  5'- gUCGCGcucaGCGCCGgugCAGCUggaggcggcaUCGACGUGg -3'
miRNA:   3'- aAGUGC----UGCGGCg--GUCGA----------AGCUGCAU- -5'
19203 3' -56.9 NC_004684.1 + 56807 0.67 0.582965
Target:  5'- cUCGCG-CGCCGaaCCAGCcggaUCGGCGg- -3'
miRNA:   3'- aAGUGCuGCGGC--GGUCGa---AGCUGCau -5'
19203 3' -56.9 NC_004684.1 + 52890 0.67 0.572194
Target:  5'- gUCACG-UGCCaCCGGCgacCGGCGUGg -3'
miRNA:   3'- aAGUGCuGCGGcGGUCGaa-GCUGCAU- -5'
19203 3' -56.9 NC_004684.1 + 52750 0.67 0.561472
Target:  5'- gUCGuCGugGCCGCUGGCgcagucgUUGACGc- -3'
miRNA:   3'- aAGU-GCugCGGCGGUCGa------AGCUGCau -5'
19203 3' -56.9 NC_004684.1 + 27315 0.67 0.561472
Target:  5'- -gCuCGGUGCgGCCAGCUUUGACGa- -3'
miRNA:   3'- aaGuGCUGCGgCGGUCGAAGCUGCau -5'
19203 3' -56.9 NC_004684.1 + 17194 0.67 0.561472
Target:  5'- -gCACGACGCCGaCGGCaaCGuCGUGc -3'
miRNA:   3'- aaGUGCUGCGGCgGUCGaaGCuGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.