miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19203 5' -54.1 NC_004684.1 + 31401 0.65 0.83805
Target:  5'- gGCGGGCaccacccCGACUGUgcgCCAGGCcugCGUGg -3'
miRNA:   3'- gCGUCCG-------GCUGAUA---GGUUCGca-GUAC- -5'
19203 5' -54.1 NC_004684.1 + 13393 0.66 0.830039
Target:  5'- cCGCuGGCCGAUUGagCCGGacGUGUCGg- -3'
miRNA:   3'- -GCGuCCGGCUGAUa-GGUU--CGCAGUac -5'
19203 5' -54.1 NC_004684.1 + 10729 0.66 0.830039
Target:  5'- aGcCAGGCCGACgagaUCGAGCGgcgCAa- -3'
miRNA:   3'- gC-GUCCGGCUGaua-GGUUCGCa--GUac -5'
19203 5' -54.1 NC_004684.1 + 33514 0.66 0.820941
Target:  5'- uCGCGGGCgguggCGGCUAUgCGGG-GUCGUa -3'
miRNA:   3'- -GCGUCCG-----GCUGAUAgGUUCgCAGUAc -5'
19203 5' -54.1 NC_004684.1 + 45650 0.66 0.820941
Target:  5'- gCGCGcGGCCGACcAUCUgcGCGUa--- -3'
miRNA:   3'- -GCGU-CCGGCUGaUAGGuuCGCAguac -5'
19203 5' -54.1 NC_004684.1 + 53837 0.66 0.820941
Target:  5'- aCGCAGuaGCCGAUggccgCCAGGCG-CAg- -3'
miRNA:   3'- -GCGUC--CGGCUGaua--GGUUCGCaGUac -5'
19203 5' -54.1 NC_004684.1 + 63869 0.66 0.811645
Target:  5'- cCGCAGGUCGGCccacCCGucggcgauugcGGCGUCcUGg -3'
miRNA:   3'- -GCGUCCGGCUGaua-GGU-----------UCGCAGuAC- -5'
19203 5' -54.1 NC_004684.1 + 34880 0.66 0.802162
Target:  5'- gCGguGGCCcgGACggugCCGAGUgagGUCAUGu -3'
miRNA:   3'- -GCguCCGG--CUGaua-GGUUCG---CAGUAC- -5'
19203 5' -54.1 NC_004684.1 + 39189 0.67 0.762563
Target:  5'- gCGCAGGCUGgcgguGCUGUCCAcguGCGccUCGc- -3'
miRNA:   3'- -GCGUCCGGC-----UGAUAGGUu--CGC--AGUac -5'
19203 5' -54.1 NC_004684.1 + 10138 0.67 0.761542
Target:  5'- uGCGGGCCGACggugCCGcccgcccagguggGGCGUUu-- -3'
miRNA:   3'- gCGUCCGGCUGaua-GGU-------------UCGCAGuac -5'
19203 5' -54.1 NC_004684.1 + 19800 0.67 0.752302
Target:  5'- gGCGGGCCuGCUggCCAAGgaguuCGUCAg- -3'
miRNA:   3'- gCGUCCGGcUGAuaGGUUC-----GCAGUac -5'
19203 5' -54.1 NC_004684.1 + 59402 0.67 0.752302
Target:  5'- uCGUAGGCCu----UCCAGGCGUCc-- -3'
miRNA:   3'- -GCGUCCGGcugauAGGUUCGCAGuac -5'
19203 5' -54.1 NC_004684.1 + 46869 0.68 0.731425
Target:  5'- gCGCAuGGUgGugUAUCCGcGCGaCAUGu -3'
miRNA:   3'- -GCGU-CCGgCugAUAGGUuCGCaGUAC- -5'
19203 5' -54.1 NC_004684.1 + 20987 0.68 0.720832
Target:  5'- gCGCAGGUCGGCccgAUCCugcGGCG-CAc- -3'
miRNA:   3'- -GCGUCCGGCUGa--UAGGu--UCGCaGUac -5'
19203 5' -54.1 NC_004684.1 + 64987 0.68 0.720832
Target:  5'- aCGCGGGUcugCGGCUcgCCAgcGGCGUUg-- -3'
miRNA:   3'- -GCGUCCG---GCUGAuaGGU--UCGCAGuac -5'
19203 5' -54.1 NC_004684.1 + 45114 0.68 0.720832
Target:  5'- gCGCGGGCCuuGGCcgccgCCAGGCGguccCAUGc -3'
miRNA:   3'- -GCGUCCGG--CUGaua--GGUUCGCa---GUAC- -5'
19203 5' -54.1 NC_004684.1 + 64608 0.68 0.719768
Target:  5'- uGCGGuuCCGGCUGaaccUCCAgcucguugccgucGGCGUCGUGg -3'
miRNA:   3'- gCGUCc-GGCUGAU----AGGU-------------UCGCAGUAC- -5'
19203 5' -54.1 NC_004684.1 + 61032 0.68 0.714434
Target:  5'- gCGCAGGCCaucgccgccgacaugGACaacgCCAAG-GUCAUGa -3'
miRNA:   3'- -GCGUCCGG---------------CUGaua-GGUUCgCAGUAC- -5'
19203 5' -54.1 NC_004684.1 + 28353 0.68 0.710152
Target:  5'- aGCAGGCCaccguCUA-CCGGGUGUCcUGg -3'
miRNA:   3'- gCGUCCGGcu---GAUaGGUUCGCAGuAC- -5'
19203 5' -54.1 NC_004684.1 + 31997 0.68 0.710152
Target:  5'- cCGCAGGCCGccaccgaacuGCUGaCCGGGCaGUCc-- -3'
miRNA:   3'- -GCGUCCGGC----------UGAUaGGUUCG-CAGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.