miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19204 3' -60.2 NC_004684.1 + 39330 0.66 0.537637
Target:  5'- gCCGCGCccAGGCCgguUGGCcGCccacucgucaauGguGUCGGg -3'
miRNA:   3'- aGGUGCG--UCCGG---ACCG-CG------------UguCAGCC- -5'
19204 3' -60.2 NC_004684.1 + 57843 0.66 0.527502
Target:  5'- gCgGCGCAccGGCUccaaccGGCGCACcagcucgcGGUCGGa -3'
miRNA:   3'- aGgUGCGU--CCGGa-----CCGCGUG--------UCAGCC- -5'
19204 3' -60.2 NC_004684.1 + 49120 0.66 0.527502
Target:  5'- gUCgGCGUcGGCCUGGaaCGUACcGUCGc -3'
miRNA:   3'- -AGgUGCGuCCGGACC--GCGUGuCAGCc -5'
19204 3' -60.2 NC_004684.1 + 67134 0.66 0.527502
Target:  5'- --uGCGCAGGCUguUGGCGauCAGcUCGGu -3'
miRNA:   3'- aggUGCGUCCGG--ACCGCguGUC-AGCC- -5'
19204 3' -60.2 NC_004684.1 + 65771 0.66 0.527502
Target:  5'- gCCGCGC--GCCggugGGCGCGCGcaCGGc -3'
miRNA:   3'- aGGUGCGucCGGa---CCGCGUGUcaGCC- -5'
19204 3' -60.2 NC_004684.1 + 61177 0.66 0.526493
Target:  5'- gCCAggucggcgggguUGguGGCCUcGGCGUACAccuggccguucgcGUCGGc -3'
miRNA:   3'- aGGU------------GCguCCGGA-CCGCGUGU-------------CAGCC- -5'
19204 3' -60.2 NC_004684.1 + 64936 0.66 0.51744
Target:  5'- gCgGCGguGagcGCCUGGCGgGCGGUggccCGGu -3'
miRNA:   3'- aGgUGCguC---CGGACCGCgUGUCA----GCC- -5'
19204 3' -60.2 NC_004684.1 + 55339 0.66 0.51744
Target:  5'- -gCugGCAGgugaGCCUGGCGCGCAu---- -3'
miRNA:   3'- agGugCGUC----CGGACCGCGUGUcagcc -5'
19204 3' -60.2 NC_004684.1 + 15126 0.66 0.51744
Target:  5'- aCCgggACGCuGGGCCUGauccacgccaGCGCGCAGcUGGc -3'
miRNA:   3'- aGG---UGCG-UCCGGAC----------CGCGUGUCaGCC- -5'
19204 3' -60.2 NC_004684.1 + 1617 0.66 0.51744
Target:  5'- gCCguGCGCGcGCCcaccGGCGCGCGG-CGGc -3'
miRNA:   3'- aGG--UGCGUcCGGa---CCGCGUGUCaGCC- -5'
19204 3' -60.2 NC_004684.1 + 50785 0.66 0.516438
Target:  5'- gUCCGCGC-GGUC-GGUGCGCaacaugaAGUCGu -3'
miRNA:   3'- -AGGUGCGuCCGGaCCGCGUG-------UCAGCc -5'
19204 3' -60.2 NC_004684.1 + 8183 0.66 0.514436
Target:  5'- -gCGCGCuGGGCCaGGCGCAgcugaucaagcgcgUGGUCGa -3'
miRNA:   3'- agGUGCG-UCCGGaCCGCGU--------------GUCAGCc -5'
19204 3' -60.2 NC_004684.1 + 43247 0.66 0.507455
Target:  5'- -gCGCGCGGGCC-GGagaGCACGGcCa- -3'
miRNA:   3'- agGUGCGUCCGGaCCg--CGUGUCaGcc -5'
19204 3' -60.2 NC_004684.1 + 41583 0.66 0.507455
Target:  5'- uUCgGCgGCGGcauuuCCUGGCGCA-GGUCGGc -3'
miRNA:   3'- -AGgUG-CGUCc----GGACCGCGUgUCAGCC- -5'
19204 3' -60.2 NC_004684.1 + 29512 0.66 0.507455
Target:  5'- aCCugGUgcagaaAGGCCU-GCGC-UGGUCGGu -3'
miRNA:   3'- aGGugCG------UCCGGAcCGCGuGUCAGCC- -5'
19204 3' -60.2 NC_004684.1 + 25189 0.66 0.507455
Target:  5'- aCCugGUuGGCCaGGCGCugGcacCGGg -3'
miRNA:   3'- aGGugCGuCCGGaCCGCGugUca-GCC- -5'
19204 3' -60.2 NC_004684.1 + 44916 0.66 0.507455
Target:  5'- gCCGCuGCcagggaaccGGCCUGGaGCGCGGgCGGg -3'
miRNA:   3'- aGGUG-CGu--------CCGGACCgCGUGUCaGCC- -5'
19204 3' -60.2 NC_004684.1 + 3819 0.66 0.507455
Target:  5'- gCCGCGCAGGCCgauggaccugaUGGCa-GCGGcCGa -3'
miRNA:   3'- aGGUGCGUCCGG-----------ACCGcgUGUCaGCc -5'
19204 3' -60.2 NC_004684.1 + 48925 0.66 0.504475
Target:  5'- gUC-CGCAGGCCcGGCcucgucgccgaacgGCAC-GUCGGc -3'
miRNA:   3'- aGGuGCGUCCGGaCCG--------------CGUGuCAGCC- -5'
19204 3' -60.2 NC_004684.1 + 59378 0.66 0.497552
Target:  5'- gUCCugGaaccGCCcGGCgGCACAGUCGc -3'
miRNA:   3'- -AGGugCguc-CGGaCCG-CGUGUCAGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.