miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
19204	5'	-53.7	NC_004684.1	+	37527	0.66	0.825956
	Target:  5'- aGGCAuGAGC-UGCGCgauggugACCGGCGcgUUGg -3' miRNA:   3'- -CUGU-CUCGuACGUGa------UGGCCGUa-GAC- -5'
19204	5'	-53.7	NC_004684.1	+	61688	0.66	0.825956
	Target:  5'- cGGCGcGAGgGcGCGCUgcuccACCGGCGUCa- -3' miRNA:   3'- -CUGU-CUCgUaCGUGA-----UGGCCGUAGac -5'
19204	5'	-53.7	NC_004684.1	+	26174	0.69	0.636857
	Target:  5'- -cCAGcAGCucgcGCACcGCUGGCGUCUGg -3' miRNA:   3'- cuGUC-UCGua--CGUGaUGGCCGUAGAC- -5'
19204	5'	-53.7	NC_004684.1	+	63730	0.69	0.625702
	Target:  5'- aACAGGGUGUGCGCaucggugccgACCGGCAUg-- -3' miRNA:   3'- cUGUCUCGUACGUGa---------UGGCCGUAgac -5'
19204	5'	-53.7	NC_004684.1	+	29465	0.69	0.614552
	Target:  5'- aGCAGGGCGUGCA-UGCUGGUgagCUGc -3' miRNA:   3'- cUGUCUCGUACGUgAUGGCCGua-GAC- -5'
19204	5'	-53.7	NC_004684.1	+	47121	0.7	0.559226
	Target:  5'- cGGCAGAGCGUGCGCcucGgUGGCGUa-- -3' miRNA:   3'- -CUGUCUCGUACGUGa--UgGCCGUAgac -5'
19204	5'	-53.7	NC_004684.1	+	44865	0.7	0.559226
	Target:  5'- gGGCAGAGCGagGC-CUGCCuGCGUCa- -3' miRNA:   3'- -CUGUCUCGUa-CGuGAUGGcCGUAGac -5'
19204	5'	-53.7	NC_004684.1	+	36014	1.09	0.001585
	Target:  5'- gGACAGAGCAUGCACUACCGGCAUCUGa -3' miRNA:   3'- -CUGUCUCGUACGUGAUGGCCGUAGAC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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