miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19205 3' -57.5 NC_004684.1 + 51636 0.66 0.657033
Target:  5'- aGGUGCCGcuGCGCAgcugCUGGC-CgUGCa -3'
miRNA:   3'- -UCAUGGCc-CGCGUaa--GGCCGuGgAUG- -5'
19205 3' -57.5 NC_004684.1 + 43178 0.66 0.657033
Target:  5'- aGGUcGCUcGGCGCGaugUCgGGCACCgcagGCa -3'
miRNA:   3'- -UCA-UGGcCCGCGUa--AGgCCGUGGa---UG- -5'
19205 3' -57.5 NC_004684.1 + 58012 0.66 0.657033
Target:  5'- cGGUACC-GGCGuCGUccucggugUCCGGCuCCUcGCg -3'
miRNA:   3'- -UCAUGGcCCGC-GUA--------AGGCCGuGGA-UG- -5'
19205 3' -57.5 NC_004684.1 + 2713 0.66 0.657033
Target:  5'- cGGUGCCGGGgGCAa---GuGCGCC-ACa -3'
miRNA:   3'- -UCAUGGCCCgCGUaaggC-CGUGGaUG- -5'
19205 3' -57.5 NC_004684.1 + 61922 0.66 0.657033
Target:  5'- --cGCgGGGUGCGggccaCGGCACCcGCc -3'
miRNA:   3'- ucaUGgCCCGCGUaag--GCCGUGGaUG- -5'
19205 3' -57.5 NC_004684.1 + 7425 0.66 0.646286
Target:  5'- aGGU-CCGGGUGCGgcaCGaGCGCCgccaGCa -3'
miRNA:   3'- -UCAuGGCCCGCGUaagGC-CGUGGa---UG- -5'
19205 3' -57.5 NC_004684.1 + 8618 0.66 0.646286
Target:  5'- --aGCCcGGUGCA--CCGGCACCg-- -3'
miRNA:   3'- ucaUGGcCCGCGUaaGGCCGUGGaug -5'
19205 3' -57.5 NC_004684.1 + 18423 0.66 0.646286
Target:  5'- --cGgCGGGCGCA--CCGGCgGCCgACg -3'
miRNA:   3'- ucaUgGCCCGCGUaaGGCCG-UGGaUG- -5'
19205 3' -57.5 NC_004684.1 + 54193 0.66 0.646286
Target:  5'- --aGCa-GGCGCAaaCCGGCgGCCUGCu -3'
miRNA:   3'- ucaUGgcCCGCGUaaGGCCG-UGGAUG- -5'
19205 3' -57.5 NC_004684.1 + 15521 0.66 0.646286
Target:  5'- cGGgGCCGGGCGCugga-GGCGCUg-- -3'
miRNA:   3'- -UCaUGGCCCGCGuaaggCCGUGGaug -5'
19205 3' -57.5 NC_004684.1 + 54377 0.66 0.62907
Target:  5'- cGUaACCGGGCGCGUcgggggacauaaUccacCCGGCccggcgcucgguguuGCCUGCc -3'
miRNA:   3'- uCA-UGGCCCGCGUA------------A----GGCCG---------------UGGAUG- -5'
19205 3' -57.5 NC_004684.1 + 63220 0.66 0.624766
Target:  5'- --cGCCGGGCGCAa-CCGG-GCCa-- -3'
miRNA:   3'- ucaUGGCCCGCGUaaGGCCgUGGaug -5'
19205 3' -57.5 NC_004684.1 + 9819 0.66 0.624766
Target:  5'- aGGUugCGGGCGaug-UCGGCcaACCgGCg -3'
miRNA:   3'- -UCAugGCCCGCguaaGGCCG--UGGaUG- -5'
19205 3' -57.5 NC_004684.1 + 6859 0.66 0.624766
Target:  5'- cGGcACCGGGCGCGg--CGaGaucaGCCUGCg -3'
miRNA:   3'- -UCaUGGCCCGCGUaagGC-Cg---UGGAUG- -5'
19205 3' -57.5 NC_004684.1 + 18861 0.66 0.624766
Target:  5'- cGGUgACCGGGUggccGCAcUCagGGCACCaGCg -3'
miRNA:   3'- -UCA-UGGCCCG----CGUaAGg-CCGUGGaUG- -5'
19205 3' -57.5 NC_004684.1 + 19546 0.66 0.62369
Target:  5'- gGGUgcGCCGGGCGgugcCAggucUCCGggccuggcgucguGCACCUGCc -3'
miRNA:   3'- -UCA--UGGCCCGC----GUa---AGGC-------------CGUGGAUG- -5'
19205 3' -57.5 NC_004684.1 + 9065 0.66 0.61401
Target:  5'- --cACCGGGCGCGccaugacCCGGCgucGCCg-- -3'
miRNA:   3'- ucaUGGCCCGCGUaa-----GGCCG---UGGaug -5'
19205 3' -57.5 NC_004684.1 + 59141 0.66 0.61401
Target:  5'- cGUGgCGGGacuGCAUguugucggcgCUGGUGCCUGCg -3'
miRNA:   3'- uCAUgGCCCg--CGUAa---------GGCCGUGGAUG- -5'
19205 3' -57.5 NC_004684.1 + 24179 0.66 0.61401
Target:  5'- cGGUGCCGc-CGCccaaaaugCCGGUGCCUGCg -3'
miRNA:   3'- -UCAUGGCccGCGuaa-----GGCCGUGGAUG- -5'
19205 3' -57.5 NC_004684.1 + 12234 0.66 0.61401
Target:  5'- cGUGCCGcccgacGGCgGCGaUCCGGuCACgUACa -3'
miRNA:   3'- uCAUGGC------CCG-CGUaAGGCC-GUGgAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.