miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19205 5' -57.4 NC_004684.1 + 42872 0.66 0.688203
Target:  5'- gCCGUAGAUGgcaccGCCGaacGCGcGGCCCUGcGg -3'
miRNA:   3'- -GGCGUCUAC-----UGGC---CGUaCUGGGAC-Ca -5'
19205 5' -57.4 NC_004684.1 + 45376 0.66 0.687148
Target:  5'- gCCaGCAGGucgaugcUGACCaGCuccaccgGACCCUGGc -3'
miRNA:   3'- -GG-CGUCU-------ACUGGcCGua-----CUGGGACCa -5'
19205 5' -57.4 NC_004684.1 + 50654 0.66 0.677631
Target:  5'- gCCGuCGGGggugcgGACCaGGCGUGcGCCC-GGUg -3'
miRNA:   3'- -GGC-GUCUa-----CUGG-CCGUAC-UGGGaCCA- -5'
19205 5' -57.4 NC_004684.1 + 46682 0.66 0.677631
Target:  5'- uUCGgGGGUGACCgGGUcgGugUCgUGGUa -3'
miRNA:   3'- -GGCgUCUACUGG-CCGuaCugGG-ACCA- -5'
19205 5' -57.4 NC_004684.1 + 67011 0.66 0.677631
Target:  5'- gCGguGAuccUGACCGGCAccacgaUGGCC-UGGc -3'
miRNA:   3'- gGCguCU---ACUGGCCGU------ACUGGgACCa -5'
19205 5' -57.4 NC_004684.1 + 46911 0.66 0.674451
Target:  5'- gCCGCAucccccagGACCGGCcaacggcgguguggGUGACCCguucgGGa -3'
miRNA:   3'- -GGCGUcua-----CUGGCCG--------------UACUGGGa----CCa -5'
19205 5' -57.4 NC_004684.1 + 64466 0.66 0.667018
Target:  5'- gUCGCAGAUGuuguagagcagGCCGGUgGUGGCCucguuCUGGa -3'
miRNA:   3'- -GGCGUCUAC-----------UGGCCG-UACUGG-----GACCa -5'
19205 5' -57.4 NC_004684.1 + 53791 0.66 0.667018
Target:  5'- cUCGguGAguuCCGGCca-GCCCUGGUc -3'
miRNA:   3'- -GGCguCUacuGGCCGuacUGGGACCA- -5'
19205 5' -57.4 NC_004684.1 + 29444 0.66 0.645711
Target:  5'- cCCGCuGGgcGACCGGUucGACaucgaCCUGGUg -3'
miRNA:   3'- -GGCG-UCuaCUGGCCGuaCUG-----GGACCA- -5'
19205 5' -57.4 NC_004684.1 + 9151 0.66 0.645711
Target:  5'- gCGCGGcagGugCGGCAacUGACCUUgccGGUg -3'
miRNA:   3'- gGCGUCua-CugGCCGU--ACUGGGA---CCA- -5'
19205 5' -57.4 NC_004684.1 + 15546 0.66 0.644643
Target:  5'- uCCGCGuuGGUgGACCGGCGaccaucgagaagcUGACCCgcgagaagGGg -3'
miRNA:   3'- -GGCGU--CUA-CUGGCCGU-------------ACUGGGa-------CCa -5'
19205 5' -57.4 NC_004684.1 + 52664 0.66 0.635034
Target:  5'- uCC-CAGGUGGCCaGCAccucuuUGACCC-GGUu -3'
miRNA:   3'- -GGcGUCUACUGGcCGU------ACUGGGaCCA- -5'
19205 5' -57.4 NC_004684.1 + 16073 0.66 0.635034
Target:  5'- gCGCuGAUGGCCGGUgaccggGAguUCCUGGc -3'
miRNA:   3'- gGCGuCUACUGGCCGua----CU--GGGACCa -5'
19205 5' -57.4 NC_004684.1 + 46313 0.66 0.635034
Target:  5'- cCCGCAc-UGACCGGCccagGugCCcGGUc -3'
miRNA:   3'- -GGCGUcuACUGGCCGua--CugGGaCCA- -5'
19205 5' -57.4 NC_004684.1 + 21628 0.66 0.635034
Target:  5'- aCCGC-----ACCGGCGUGACCaagaacCUGGUc -3'
miRNA:   3'- -GGCGucuacUGGCCGUACUGG------GACCA- -5'
19205 5' -57.4 NC_004684.1 + 27152 0.67 0.624355
Target:  5'- aCCGCcccGA-GACCGGCAagUGGgCCgGGUa -3'
miRNA:   3'- -GGCGu--CUaCUGGCCGU--ACUgGGaCCA- -5'
19205 5' -57.4 NC_004684.1 + 16153 0.67 0.624355
Target:  5'- gUGCGGcAUcGACCGGCcgAUGGCCaaGGUg -3'
miRNA:   3'- gGCGUC-UA-CUGGCCG--UACUGGgaCCA- -5'
19205 5' -57.4 NC_004684.1 + 22812 0.67 0.58179
Target:  5'- aCGCuGGUcGACCGGCAguuCCCggcGGUg -3'
miRNA:   3'- gGCGuCUA-CUGGCCGUacuGGGa--CCA- -5'
19205 5' -57.4 NC_004684.1 + 55329 0.67 0.571227
Target:  5'- uUCGCcGAcGGCUGGCAggUGAgCCUGGc -3'
miRNA:   3'- -GGCGuCUaCUGGCCGU--ACUgGGACCa -5'
19205 5' -57.4 NC_004684.1 + 42104 0.67 0.571227
Target:  5'- gCCGCcuGGuGUGGCCGGaa-GGCCCUuGGUg -3'
miRNA:   3'- -GGCG--UC-UACUGGCCguaCUGGGA-CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.