miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19206 3' -63.7 NC_004684.1 + 47153 0.66 0.41652
Target:  5'- cCCCGGUGCCcaggaGCaccguagCGGCGGCc -3'
miRNA:   3'- -GGGCCACGGcug--CGacca---GCCGCCGc -5'
19206 3' -63.7 NC_004684.1 + 24775 0.66 0.41652
Target:  5'- aCCGGcaCCGGgcCGCUGGUCgauacggccaaGGCGGuCGg -3'
miRNA:   3'- gGGCCacGGCU--GCGACCAG-----------CCGCC-GC- -5'
19206 3' -63.7 NC_004684.1 + 28269 0.66 0.41652
Target:  5'- gCCUGGUGCgCGAggcCGCUGG-C-GUGGUGc -3'
miRNA:   3'- -GGGCCACG-GCU---GCGACCaGcCGCCGC- -5'
19206 3' -63.7 NC_004684.1 + 37611 0.66 0.415656
Target:  5'- gCCCGGccgcccaUGCCGaACGCc-GUCGGUGcGCu -3'
miRNA:   3'- -GGGCC-------ACGGC-UGCGacCAGCCGC-CGc -5'
19206 3' -63.7 NC_004684.1 + 63744 0.66 0.407933
Target:  5'- aUCGGUGCCGACcgGCaUGacccaGGUGGCGc -3'
miRNA:   3'- gGGCCACGGCUG--CG-ACcag--CCGCCGC- -5'
19206 3' -63.7 NC_004684.1 + 57005 0.66 0.407933
Target:  5'- gCCGGggacgaGCgCGccaucgggguGCGCUGGUCGGUcacGGUGg -3'
miRNA:   3'- gGGCCa-----CG-GC----------UGCGACCAGCCG---CCGC- -5'
19206 3' -63.7 NC_004684.1 + 41452 0.66 0.407933
Target:  5'- gCCGGUGUCaguGGgGCUGacccCGGCGGUGc -3'
miRNA:   3'- gGGCCACGG---CUgCGACca--GCCGCCGC- -5'
19206 3' -63.7 NC_004684.1 + 43256 0.66 0.407933
Target:  5'- -gCGGUGCgcagcggguaCGGCuGCUGcGUCGGCGuGCc -3'
miRNA:   3'- ggGCCACG----------GCUG-CGAC-CAGCCGC-CGc -5'
19206 3' -63.7 NC_004684.1 + 44822 0.66 0.407933
Target:  5'- gUCCGGgugGgCGAgcaGCgGGUUGGCGGUc -3'
miRNA:   3'- -GGGCCa--CgGCUg--CGaCCAGCCGCCGc -5'
19206 3' -63.7 NC_004684.1 + 61465 0.66 0.407933
Target:  5'- gCCCGGUgGCCaGCGCggccagccGGUCGuGC-GCGa -3'
miRNA:   3'- -GGGCCA-CGGcUGCGa-------CCAGC-CGcCGC- -5'
19206 3' -63.7 NC_004684.1 + 9017 0.66 0.407933
Target:  5'- gCgCGGUGCCG-UGCgGGgCGGCaaccGGCGc -3'
miRNA:   3'- -GgGCCACGGCuGCGaCCaGCCG----CCGC- -5'
19206 3' -63.7 NC_004684.1 + 4380 0.66 0.407933
Target:  5'- cCCCGGagGCCGA-GCUGGUCuaucGCGccaGCa -3'
miRNA:   3'- -GGGCCa-CGGCUgCGACCAGc---CGC---CGc -5'
19206 3' -63.7 NC_004684.1 + 50782 0.66 0.40623
Target:  5'- gCgCGGUgagcaugcaggagGCCaccagcaGACGCUGG-CGGCGGUa -3'
miRNA:   3'- -GgGCCA-------------CGG-------CUGCGACCaGCCGCCGc -5'
19206 3' -63.7 NC_004684.1 + 63369 0.66 0.40623
Target:  5'- aCCGaGcgGCCGACGCgccagccgaUGGCGGCGu -3'
miRNA:   3'- gGGC-Ca-CGGCUGCGacca-----GCCGCCGC- -5'
19206 3' -63.7 NC_004684.1 + 51714 0.66 0.402835
Target:  5'- aCCGGUGCCG-C-CUuccaGGUCGuacugggccaggaauGCGGCGu -3'
miRNA:   3'- gGGCCACGGCuGcGA----CCAGC---------------CGCCGC- -5'
19206 3' -63.7 NC_004684.1 + 46662 0.66 0.399459
Target:  5'- -aCGGUGUCuccuguuGCGUUGGcguugCGGUGGCGg -3'
miRNA:   3'- ggGCCACGGc------UGCGACCa----GCCGCCGC- -5'
19206 3' -63.7 NC_004684.1 + 38105 0.66 0.398618
Target:  5'- aCUCGG-GUCGGaGCUGGugauggugagcugUCGGCGGuCGg -3'
miRNA:   3'- -GGGCCaCGGCUgCGACC-------------AGCCGCC-GC- -5'
19206 3' -63.7 NC_004684.1 + 53064 0.66 0.398618
Target:  5'- -gUGGUGuCCGAcuCGCUGGUaccggcguacaccUGcGCGGCGg -3'
miRNA:   3'- ggGCCAC-GGCU--GCGACCA-------------GC-CGCCGC- -5'
19206 3' -63.7 NC_004684.1 + 2598 0.66 0.398618
Target:  5'- aCCGaGUacGCCGACGCggaguucUGGaagcaGGCGGUGg -3'
miRNA:   3'- gGGC-CA--CGGCUGCG-------ACCag---CCGCCGC- -5'
19206 3' -63.7 NC_004684.1 + 1596 0.66 0.396939
Target:  5'- gCCCGGUGCaCGgcaucggucgccguGCGCgcgcccaccGGcgcgCGGCGGCc -3'
miRNA:   3'- -GGGCCACG-GC--------------UGCGa--------CCa---GCCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.