miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19206 5' -57.7 NC_004684.1 + 21202 0.66 0.630972
Target:  5'- aUACGcACGCCUAccuGugCGGgUUCACCGCc -3'
miRNA:   3'- -AUGC-UGUGGGU---CugGUCgAGGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 2517 0.66 0.630972
Target:  5'- aACGACGCCCGGcACU-GCggaCGCUGCg -3'
miRNA:   3'- aUGCUGUGGGUC-UGGuCGag-GUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 15788 0.66 0.630972
Target:  5'- gGCGACACCgGcaACguGCacaCCACCACg -3'
miRNA:   3'- aUGCUGUGGgUc-UGguCGa--GGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 9033 0.66 0.630972
Target:  5'- gGCGGCAaCCGGcgcggcaacGCCAGCagggCCACCGg -3'
miRNA:   3'- aUGCUGUgGGUC---------UGGUCGa---GGUGGUg -5'
19206 5' -57.7 NC_004684.1 + 14566 0.66 0.630972
Target:  5'- --gGACACCUGGugcGCCGGggCCACCGa -3'
miRNA:   3'- augCUGUGGGUC---UGGUCgaGGUGGUg -5'
19206 5' -57.7 NC_004684.1 + 18873 0.66 0.629889
Target:  5'- gGCcGCACUCAGggcaccaGCgCGGCUCCuCCACg -3'
miRNA:   3'- aUGcUGUGGGUC-------UG-GUCGAGGuGGUG- -5'
19206 5' -57.7 NC_004684.1 + 7479 0.66 0.62015
Target:  5'- -cCGACGCUgacaaGGGCCGGUucgugcgCCGCCGCa -3'
miRNA:   3'- auGCUGUGGg----UCUGGUCGa------GGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 34315 0.66 0.62015
Target:  5'- -cCGACugUCGGGCUuccaagucGGCUUCACCGg -3'
miRNA:   3'- auGCUGugGGUCUGG--------UCGAGGUGGUg -5'
19206 5' -57.7 NC_004684.1 + 47647 0.66 0.62015
Target:  5'- --gGACGgCCAGugCGGCguuggCCGCCu- -3'
miRNA:   3'- augCUGUgGGUCugGUCGa----GGUGGug -5'
19206 5' -57.7 NC_004684.1 + 9227 0.66 0.62015
Target:  5'- gGCGGCACaguCGcACCGGCUCC-CCGg -3'
miRNA:   3'- aUGCUGUGg--GUcUGGUCGAGGuGGUg -5'
19206 5' -57.7 NC_004684.1 + 50873 0.66 0.62015
Target:  5'- -uCGGCGgCCAcAUCGGUgUCCACCACa -3'
miRNA:   3'- auGCUGUgGGUcUGGUCG-AGGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 61124 0.66 0.62015
Target:  5'- cUACGACACCaAGAUgGGCgacgCgCACUGCa -3'
miRNA:   3'- -AUGCUGUGGgUCUGgUCGa---G-GUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 21787 0.66 0.617987
Target:  5'- -cCGACGCgCUGGugcuggaccuguCCGGCUCCACCcGCg -3'
miRNA:   3'- auGCUGUG-GGUCu-----------GGUCGAGGUGG-UG- -5'
19206 5' -57.7 NC_004684.1 + 32303 0.66 0.613662
Target:  5'- -cCGGCACCgAcGGCUgaugguugagcgcgaAGCUCCACCGg -3'
miRNA:   3'- auGCUGUGGgU-CUGG---------------UCGAGGUGGUg -5'
19206 5' -57.7 NC_004684.1 + 56340 0.66 0.609339
Target:  5'- -cCGuCcUCCAGACgGGCguccUCCACCACg -3'
miRNA:   3'- auGCuGuGGGUCUGgUCG----AGGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 41589 0.66 0.609339
Target:  5'- gGCGGCAuuUCCuGGCgCAGgUCgGCCACg -3'
miRNA:   3'- aUGCUGU--GGGuCUG-GUCgAGgUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 55503 0.66 0.598547
Target:  5'- cACGuugaauCCCGGuguguucaccGCCAGCgCCGCCACg -3'
miRNA:   3'- aUGCugu---GGGUC----------UGGUCGaGGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 11613 0.66 0.598547
Target:  5'- gACGGCACCgAG-CUGGCcgUCgGCCGCc -3'
miRNA:   3'- aUGCUGUGGgUCuGGUCG--AGgUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 57842 0.66 0.598547
Target:  5'- cGCGGCGCaCCGGcuccaACCGGCg-CACCAg -3'
miRNA:   3'- aUGCUGUG-GGUC-----UGGUCGagGUGGUg -5'
19206 5' -57.7 NC_004684.1 + 12022 0.66 0.598547
Target:  5'- gGCGGCggugGCCaAGGCCAuGCUCgACCAg -3'
miRNA:   3'- aUGCUG----UGGgUCUGGU-CGAGgUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.