miRNA display CGI


Results 1 - 20 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19206 5' -57.7 NC_004684.1 + 50873 0.66 0.62015
Target:  5'- -uCGGCGgCCAcAUCGGUgUCCACCACa -3'
miRNA:   3'- auGCUGUgGGUcUGGUCG-AGGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 51337 0.66 0.592085
Target:  5'- aGCGcCAUCguGACCGGCucgaucugcgcccagUCCACCGa -3'
miRNA:   3'- aUGCuGUGGguCUGGUCG---------------AGGUGGUg -5'
19206 5' -57.7 NC_004684.1 + 15788 0.66 0.630972
Target:  5'- gGCGACACCgGcaACguGCacaCCACCACg -3'
miRNA:   3'- aUGCUGUGGgUc-UGguCGa--GGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 4240 0.66 0.598547
Target:  5'- cGCGGCGCgCAGGagccgcacUCGGCcaCCACCACc -3'
miRNA:   3'- aUGCUGUGgGUCU--------GGUCGa-GGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 34315 0.66 0.62015
Target:  5'- -cCGACugUCGGGCUuccaagucGGCUUCACCGg -3'
miRNA:   3'- auGCUGugGGUCUGG--------UCGAGGUGGUg -5'
19206 5' -57.7 NC_004684.1 + 11613 0.66 0.598547
Target:  5'- gACGGCACCgAG-CUGGCcgUCgGCCGCc -3'
miRNA:   3'- aUGCUGUGGgUCuGGUCG--AGgUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 41589 0.66 0.609339
Target:  5'- gGCGGCAuuUCCuGGCgCAGgUCgGCCACg -3'
miRNA:   3'- aUGCUGU--GGGuCUG-GUCgAGgUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 21202 0.66 0.630972
Target:  5'- aUACGcACGCCUAccuGugCGGgUUCACCGCc -3'
miRNA:   3'- -AUGC-UGUGGGU---CugGUCgAGGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 2517 0.66 0.630972
Target:  5'- aACGACGCCCGGcACU-GCggaCGCUGCg -3'
miRNA:   3'- aUGCUGUGGGUC-UGGuCGag-GUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 30049 0.66 0.597469
Target:  5'- gGCGAUccugugaGCCUGGuACCGGCcUCCcgGCCACu -3'
miRNA:   3'- aUGCUG-------UGGGUC-UGGUCG-AGG--UGGUG- -5'
19206 5' -57.7 NC_004684.1 + 38534 0.66 0.587783
Target:  5'- aACGACuuCCGGuucgugacgGCCAGCcagUUCGCCGCa -3'
miRNA:   3'- aUGCUGugGGUC---------UGGUCG---AGGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 48629 0.66 0.587783
Target:  5'- gUGCGcCucuuCCCAGGCCcagaugcGCUgCACCGCg -3'
miRNA:   3'- -AUGCuGu---GGGUCUGGu------CGAgGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 54259 0.66 0.577054
Target:  5'- cGgGACAgcucCUCAG-CCAGCgCCGCCACc -3'
miRNA:   3'- aUgCUGU----GGGUCuGGUCGaGGUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 63738 0.66 0.587783
Target:  5'- gUACGAUgACCCGGcACCGGg-CgGCCACu -3'
miRNA:   3'- -AUGCUG-UGGGUC-UGGUCgaGgUGGUG- -5'
19206 5' -57.7 NC_004684.1 + 18873 0.66 0.629889
Target:  5'- gGCcGCACUCAGggcaccaGCgCGGCUCCuCCACg -3'
miRNA:   3'- aUGcUGUGGGUC-------UG-GUCGAGGuGGUG- -5'
19206 5' -57.7 NC_004684.1 + 18918 0.66 0.587783
Target:  5'- cGCGGCGCaUCAGACCAGgC-CCuuguCCAUg -3'
miRNA:   3'- aUGCUGUG-GGUCUGGUC-GaGGu---GGUG- -5'
19206 5' -57.7 NC_004684.1 + 12022 0.66 0.598547
Target:  5'- gGCGGCggugGCCaAGGCCAuGCUCgACCAg -3'
miRNA:   3'- aUGCUG----UGGgUCUGGU-CGAGgUGGUg -5'
19206 5' -57.7 NC_004684.1 + 47647 0.66 0.62015
Target:  5'- --gGACGgCCAGugCGGCguuggCCGCCu- -3'
miRNA:   3'- augCUGUgGGUCugGUCGa----GGUGGug -5'
19206 5' -57.7 NC_004684.1 + 16289 0.66 0.587783
Target:  5'- cGCGGCGCUucacugucguauCAGACCGGg-CCGCCGg -3'
miRNA:   3'- aUGCUGUGG------------GUCUGGUCgaGGUGGUg -5'
19206 5' -57.7 NC_004684.1 + 57293 0.66 0.577054
Target:  5'- gGCGagccGCACCCcGGCCAGCcCUGCC-Cg -3'
miRNA:   3'- aUGC----UGUGGGuCUGGUCGaGGUGGuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.